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PH2015_18_scaffold_2_prodigal-single.1__X__X__00097
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00097
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-84
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3hoiA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.64 | 52.0 | 3.89e-01 | 90.5% | 78.8% |
| 3hheA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 47.0 | 4.65e-01 | 93.2% | 80.8% |
| 1chmA01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.60 | 44.0 | 3.51e-01 | 79.7% | 87.7% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.59 | 51.0 | 4.37e-01 | 95.9% | 98.3% |
| 2o5aA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 53.0 | 4.75e-01 | 100.0% | 78.4% |
| 4lbhA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.58 | 48.0 | 4.49e-01 | 94.6% | 89.4% |
| 3viuA04 | 3.90.650.10 | Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain | 0.58 | 47.0 | 3.68e-01 | 93.2% | 70.5% |
| 2zqeA00 | 3.30.1370.110 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.58 | 47.0 | 4.58e-01 | 87.8% | 97.5% |
| 3tviA01 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.57 | 51.0 | 3.45e-01 | 100.0% | 63.7% |
| 3kg0A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 47.0 | 4.39e-01 | 94.6% | 86.6% |
| 1a9xA04 | 1.10.1030.10 | Mainly Alpha › Orthogonal Bundle › Carbamoyl Phosphate Synthetase; Chain A, domain 4 › Carbamoyl-phosphate synthetase, large subunit oligomerisation domain | 0.57 | 38.0 | 3.10e-01 | 79.7% | 34.7% |
| 1s7iA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.56 | 47.0 | 4.00e-01 | 93.2% | 84.7% |
| 4mt1A06 | 3.30.70.1430 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain | 0.56 | 47.0 | 4.28e-01 | 94.6% | 92.1% |
| 1mwqA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.56 | 45.0 | 4.20e-01 | 93.2% | 87.0% |
| 4pcqA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 44.0 | 4.29e-01 | 89.2% | 81.0% |
| 3keyA02 | 3.30.1370.230 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain | 0.55 | 45.0 | 4.28e-01 | 91.9% | 85.2% |
| 1chmA02 | 3.90.230.10 | Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily | 0.55 | 45.0 | 3.31e-01 | 100.0% | 48.4% |
| 3nwoA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 41.0 | 2.78e-01 | 82.4% | 42.1% |
| 3r8jA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.54 | 45.0 | 3.45e-01 | 94.6% | 47.2% |
| 1cscA02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.53 | 43.0 | 3.86e-01 | 93.2% | 98.2% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 46.0 | 3.83e-01 | 98.6% | 76.3% |
| 4j25F00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.53 | 42.0 | 3.18e-01 | 87.8% | 85.6% |
| 6c6uN00 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.52 | 44.0 | 4.01e-01 | 93.2% | 78.6% |
| 2rb7A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 46.0 | 3.18e-01 | 100.0% | 60.9% |
| 4e6nB00 | 3.30.1610.20 | Alpha Beta › 2-Layer Sandwich › c-terminal autoproteolytic domain of nucleoporin nup98 › Hen1, N-terminal domain | 0.51 | 41.0 | 2.99e-01 | 89.2% | 45.4% |
| 1kgdA02 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.51 | 34.0 | 3.71e-01 | 91.9% | 86.7% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.51 | 39.0 | 3.88e-01 | 91.9% | 80.0% |
| 1mpyA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.51 | 43.0 | 3.49e-01 | 95.9% | 76.5% |
| 1evsA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.50 | 43.0 | 3.42e-01 | 98.6% | 91.4% |
| 6hfxA01 | 3.30.70.3040 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 41.0 | 3.71e-01 | 93.2% | 100.0% |
| 2i52B00 | 3.30.1300.20 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 7,8-dihydroneopterin aldolase (MptD) | 0.50 | 43.0 | 3.78e-01 | 100.0% | 78.4% |
ECOD (27)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3450944 | 109.4.1.843 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EFR3_ARM | 0.67 | 60.0 | 4.28e-01 | 100.0% | 85.6% |
| 3744097 | 109.4.1.1403 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TBCD, ARM_TBCD_2nd | 0.67 | 56.0 | 3.39e-01 | 90.5% | 17.1% |
| 4956385 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.66 | 59.0 | 4.45e-01 | 98.6% | 90.3% |
| 3302719 | 101.1.2.40 ↗ | alpha arrays › HTH › HTH › winged helix domain › CPSase_L_D3 | 0.62 | 37.0 | 2.99e-01 | 77.0% | 30.0% |
| 3346148 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.60 | 45.0 | 3.30e-01 | 82.4% | 39.1% |
| 4246491 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 45.0 | 3.09e-01 | 78.4% | 56.0% |
| 4959358 | 304.131.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phosphonoacetate hydrolase insertion domain › Phosphonoacetate hydrolase insertion domain | 0.59 | 52.0 | 4.84e-01 | 100.0% | 100.0% |
| 3178823 | 304.61.1.2 ↗ | a+b two layers › Alpha-beta plaits › Aldoxime dehydratase › Aldoxime dehydratase › Monooxy_af470-like | 0.58 | 49.0 | 3.74e-01 | 98.6% | 63.3% |
| 3644214 | 10.12.1.21 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › ERG2_Sigma1R | 0.57 | 46.0 | 3.61e-01 | 95.9% | 83.8% |
| 4025591 | 4340.1.1.0 ↗ | a+b complex topology › TFB5-related › TFB5-related › TFB5-related | 0.57 | 44.0 | 4.28e-01 | 93.2% | 72.9% |
| 4679654 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.57 | 47.0 | 3.67e-01 | 91.9% | 91.5% |
| 1312370 | 304.28.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran | 0.57 | 48.0 | 4.18e-01 | 94.6% | 80.7% |
| 4934738 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.57 | 41.0 | 3.85e-01 | 78.4% | 62.1% |
| 3614573 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.56 | 49.0 | 3.22e-01 | 98.6% | 27.0% |
| 4280448 | 304.111.1.1 ↗ | a+b two layers › Alpha-beta plaits › PurM C-terminal domain-like › PurM C-terminal domain-like › AIRS_C | 0.56 | 46.0 | 3.58e-01 | 93.2% | 78.3% |
| 4447297 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.56 | 47.0 | 3.71e-01 | 91.9% | 87.6% |
| 5165 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.56 | 45.0 | 4.20e-01 | 93.2% | 87.0% |
| 5053588 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.55 | 45.0 | 3.13e-01 | 91.9% | 98.5% |
| 2137789 | 304.4.1.14 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › Dabb | 0.55 | 46.0 | 4.10e-01 | 94.6% | 87.0% |
| 5038599 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.55 | 46.0 | 4.01e-01 | 100.0% | 70.4% |
| 2574301 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.55 | 45.0 | 3.45e-01 | 91.9% | 68.0% |
| 4883050 | 283.2.1.2 ↗ | a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › Phage_sheath_1C | 0.54 | 43.0 | 4.20e-01 | 91.9% | 90.7% |
| 3926462 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.52 | 38.0 | 3.49e-01 | 93.2% | 57.1% |
| 3971266 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.52 | 43.0 | 3.68e-01 | 94.6% | 88.8% |
| 3938655 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.51 | 40.0 | 3.78e-01 | 93.2% | 71.1% |
| 3605422 | 2004.1.1.28 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › TK | 0.51 | 42.0 | 3.47e-01 | 98.6% | 66.5% |
| 3424349 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.50 | 41.0 | 3.92e-01 | 94.6% | 91.1% |