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PH2015_18_scaffold_2_prodigal-single.1__X__X__00107
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00107
Identity
- Kingdom:
- phage
Quality
74.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-82
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dmoA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.71 | 41.0 | 4.47e-01 | 92.7% | 69.1% |
| 1ri9A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 42.0 | 4.40e-01 | 93.9% | 66.2% |
| 1jegA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.69 | 41.0 | 4.67e-01 | 92.7% | 81.7% |
| 2vknA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 41.0 | 4.51e-01 | 92.7% | 74.2% |
| 2jxbA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.68 | 40.0 | 4.03e-01 | 93.9% | 55.8% |
| 1bcoA02 | 2.30.30.130 | Mainly Beta › Roll › SH3 type barrels. › Transposase, Mu, C-terminal | 0.67 | 50.0 | 5.44e-01 | 92.7% | 95.6% |
| 3npfB01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.67 | 43.0 | 4.73e-01 | 93.9% | 81.8% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.66 | 33.0 | 3.50e-01 | 87.8% | 52.1% |
| 1s1nA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.66 | 39.0 | 4.42e-01 | 92.7% | 80.0% |
| 1zuyA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.64 | 39.0 | 4.45e-01 | 92.7% | 86.2% |
| 1irxA02 | 2.30.30.300 | Mainly Beta › Roll › SH3 type barrels. › class i lysyl-tRNA synthetase like | 0.64 | 32.0 | 4.05e-01 | 96.3% | 88.4% |
| 3npfA02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.63 | 41.0 | 4.42e-01 | 93.9% | 78.6% |
| 2k57A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 33.0 | 3.86e-01 | 93.9% | 74.5% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 39.0 | 4.13e-01 | 93.9% | 72.9% |
| 2ra2B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 33.0 | 3.77e-01 | 93.9% | 70.7% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 43.0 | 4.63e-01 | 93.9% | 89.6% |
| 3h41A02 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.61 | 39.0 | 4.24e-01 | 93.9% | 79.4% |
| 1awjA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 37.0 | 3.82e-01 | 95.1% | 64.9% |
| 5yrzB00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.60 | 34.0 | 3.89e-01 | 95.1% | 77.6% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.59 | 31.0 | 3.44e-01 | 95.1% | 60.6% |
| 2pqhB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.59 | 42.0 | 4.59e-01 | 97.6% | 93.8% |
| 2ldmA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 31.0 | 3.55e-01 | 93.9% | 73.6% |
| 2x8nA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.58 | 44.0 | 4.24e-01 | 98.8% | 71.1% |
| 3k8rA01 | 3.30.2020.40 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › Uncharacterised protein PF10387, DUF2442 | 0.57 | 41.0 | 4.39e-01 | 96.3% | 94.1% |
| 3c6kA02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.56 | 32.0 | 3.75e-01 | 93.9% | 82.1% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.56 | 30.0 | 3.59e-01 | 96.3% | 85.4% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.55 | 32.0 | 3.42e-01 | 95.1% | 64.8% |
| 2uz8A01 | 3.40.30.90 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › | 0.55 | 30.0 | 3.56e-01 | 80.5% | 79.6% |
| 1nkiA00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 32.0 | 2.75e-01 | 87.8% | 34.3% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 33.0 | 3.77e-01 | 79.3% | 83.9% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 38.0 | 3.63e-01 | 81.7% | 76.4% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.49e-01 | 93.9% | 77.4% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.52 | 26.0 | 3.47e-01 | 75.6% | 100.0% |
| 1zylA01 | 3.30.200.70 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › | 0.52 | 34.0 | 3.68e-01 | 100.0% | 80.0% |
| 1amiA04 | 3.20.19.10 | Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 | 0.51 | 42.0 | 3.19e-01 | 93.9% | 80.1% |
| 1hlcA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.63e-01 | 91.5% | 67.4% |
| 6e20A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 41.0 | 3.59e-01 | 91.5% | 68.9% |
| 2qqrA02 | 3.10.330.70 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.51 | 31.0 | 3.71e-01 | 92.7% | 96.2% |
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.51 | 32.0 | 3.41e-01 | 79.3% | 75.0% |
| 1a78A00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.58e-01 | 93.9% | 69.4% |
| 3wucB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 3.58e-01 | 95.1% | 65.7% |
| 4c5wA01 | 3.30.2020.30 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.50 | 43.0 | 4.11e-01 | 100.0% | 89.7% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022448 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 42.0 | 4.37e-01 | 95.1% | 64.0% |
| 3893368 | 4.1.1.99 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_10 | 0.69 | 39.0 | 4.33e-01 | 92.7% | 69.2% |
| 3496355 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 41.0 | 4.74e-01 | 92.7% | 87.3% |
| 3924338 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.69 | 41.0 | 4.37e-01 | 92.7% | 68.6% |
| 3491137 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.69 | 41.0 | 4.58e-01 | 92.7% | 80.0% |
| 3246255 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.68 | 41.0 | 4.38e-01 | 93.9% | 70.0% |
| 3415045 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.67 | 40.0 | 4.29e-01 | 92.7% | 68.6% |
| 3513923 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 40.0 | 4.23e-01 | 93.9% | 65.3% |
| 3554293 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.67 | 40.0 | 4.43e-01 | 92.7% | 75.4% |
| 4520767 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.66 | 43.0 | 4.64e-01 | 93.9% | 78.6% |
| 3554995 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 39.0 | 4.18e-01 | 92.7% | 68.6% |
| 3702915 | 4.1.1.1 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_1 | 0.66 | 39.0 | 4.42e-01 | 92.7% | 80.0% |
| 3256431 | 4.1.1.360 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, G-patch_2 | 0.63 | 33.0 | 3.39e-01 | 93.9% | 48.8% |
| 5063004 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 41.0 | 4.47e-01 | 93.9% | 83.1% |
| 4940641 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 32.0 | 4.13e-01 | 93.9% | 88.9% |
| 5023580 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 37.0 | 4.07e-01 | 91.5% | 73.8% |
| 4038705 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.62 | 41.0 | 4.55e-01 | 93.9% | 86.2% |
| 3899589 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 38.0 | 4.33e-01 | 93.9% | 85.0% |
| 4537356 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.61 | 40.0 | 4.45e-01 | 92.7% | 91.7% |
| 3970659 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 39.0 | 4.38e-01 | 78.0% | 90.0% |
| 4139090 | 4.1.1.364 ↗ | beta barrels › SH3 › SH3 › SH3 › GatD_N | 0.60 | 33.0 | 3.87e-01 | 100.0% | 78.2% |
| 3993250 | 4.1.1.333 ↗ | beta barrels › SH3 › SH3 › SH3 › PF29330 | 0.59 | 31.0 | 3.56e-01 | 93.9% | 70.9% |
| 3929260 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 32.0 | 3.72e-01 | 93.9% | 76.4% |
| 5065184 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 33.0 | 4.25e-01 | 96.3% | 100.0% |
| 3680446 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.59 | 36.0 | 3.10e-01 | 91.5% | 37.0% |
| 4024411 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 30.0 | 3.46e-01 | 96.3% | 67.3% |
| 4091771 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 33.0 | 3.77e-01 | 93.9% | 76.7% |
| 3472332 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 31.0 | 3.53e-01 | 93.9% | 74.5% |
| 3260945 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 34.0 | 3.86e-01 | 96.3% | 81.7% |
| 3992587 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.55 | 46.0 | 2.78e-01 | 93.9% | 17.3% |
| 4218142 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.55 | 33.0 | 3.11e-01 | 79.3% | 49.0% |
| 3930643 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 31.0 | 3.47e-01 | 93.9% | 73.3% |
| 3263031 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 34.0 | 3.75e-01 | 78.0% | 80.0% |
| 3970340 | 2.7.1.4 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › DUF6484 | 0.54 | 38.0 | 3.34e-01 | 82.9% | 47.3% |
| 4481543 | 220.1.1.150 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF986 | 0.54 | 38.0 | 3.90e-01 | 91.5% | 76.2% |
| 3918252 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 29.0 | 3.58e-01 | 75.6% | 100.0% |
| 3245032 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.86e-01 | 93.9% | 80.0% |
| 3917372 | 4.1.1.101 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_2 | 0.52 | 33.0 | 3.44e-01 | 79.3% | 69.3% |
| 3206852 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.52 | 37.0 | 2.59e-01 | 75.6% | 24.2% |
| 3397846 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 30.0 | 3.50e-01 | 79.3% | 85.5% |
| 3622389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 31.0 | 3.44e-01 | 76.8% | 78.5% |
| 3502290 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 30.0 | 3.44e-01 | 76.8% | 81.7% |