←Back to structures

PH2015_18_scaffold_2_prodigal-single.1__X__X__00113

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00113

Identity

Kingdom:
phage

Quality

91.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-68
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.73 43.0 4.48e-01 83.3% 63.9%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.70 42.0 3.95e-01 84.8% 50.0%
1ywmA02 1.20.1270.150 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Surface Active Protein 0.70 41.0 3.95e-01 81.8% 51.3%
3gn4A00 6.10.220.10 Special › Helix non-globular › Helical scaffold and wing domains of SecA › 0.70 43.0 3.39e-01 81.8% 31.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.67 41.0 3.95e-01 77.3% 53.9%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.30e-01 97.0% 78.0%
1t6sB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 46.0 4.45e-01 100.0% 63.6%
2yevC00 6.10.280.110 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 42.0 4.36e-01 83.3% 73.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.63 57.0 4.78e-01 100.0% 62.0%
2gsvA00 6.10.140.40 Special › Helix non-globular › Helix Hairpins › 0.62 55.0 5.52e-01 95.5% 98.5%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 46.0 4.38e-01 100.0% 67.5%
4okvE00 6.10.140.1890 Special › Helix non-globular › Helix Hairpins › 0.61 39.0 3.98e-01 77.3% 66.2%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.61 55.0 4.63e-01 100.0% 66.1%
5d1rB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.61 50.0 3.48e-01 90.9% 49.1%
5tgtA02 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 48.0 4.00e-01 89.4% 82.1%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.61 44.0 4.29e-01 77.3% 86.5%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.60 41.0 3.86e-01 89.4% 58.2%
4uw9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 46.0 4.35e-01 89.4% 90.4%
3hi0A03 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.59 51.0 3.70e-01 100.0% 54.2%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.58 47.0 4.41e-01 89.4% 92.6%
3gziA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 40.0 2.83e-01 75.8% 24.1%
3zheA02 1.25.40.760 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 51.0 3.58e-01 100.0% 53.1%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.56 42.0 3.40e-01 84.8% 81.9%
3eujB00 1.10.225.40 Mainly Alpha › Orthogonal Bundle › NK-Lysin › MukF, C-terminal domain 0.56 48.0 4.41e-01 100.0% 98.9%
5mswA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.56 45.0 4.11e-01 90.9% 71.7%
1bekA01 1.10.520.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › 0.56 47.0 3.61e-01 100.0% 91.8%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.56 41.0 3.28e-01 77.3% 94.6%
2zcxA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 48.0 3.46e-01 100.0% 46.8%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 41.0 3.90e-01 81.8% 76.5%
2a72A00 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.55 34.0 2.72e-01 90.9% 30.8%
1zoiA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 45.0 3.11e-01 98.5% 66.5%
3frqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.40e-01 97.0% 63.0%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.54 42.0 3.77e-01 95.5% 59.8%
1z7lA00 1.10.10.2660 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ubiquitin-activating enzyme E1, SCCH domain 0.54 46.0 3.14e-01 98.5% 38.8%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.34e-01 98.5% 78.8%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.54 40.0 3.57e-01 77.3% 58.0%
3bzcA02 1.10.3500.10 Mainly Alpha › Orthogonal Bundle › Tex N-terminal region-like › Tex N-terminal region-like 0.54 44.0 3.09e-01 100.0% 52.3%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 44.0 4.28e-01 95.5% 83.6%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 41.0 4.13e-01 92.4% 86.6%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 39.0 3.41e-01 81.8% 52.8%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.52 38.0 3.24e-01 81.8% 78.3%
2gfnA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 43.0 3.20e-01 100.0% 52.1%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.51 34.0 3.48e-01 74.2% 70.1%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.51 43.0 3.90e-01 92.4% 95.4%
1euvA01 1.10.418.20 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › 0.51 38.0 3.38e-01 84.8% 92.4%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.29e-01 100.0% 47.5%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.50 44.0 3.70e-01 97.0% 60.7%
1mhyG01 1.20.1280.10 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 1 0.50 41.0 4.14e-01 100.0% 91.2%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.75 69.0 4.40e-01 100.0% 39.3%
4158890 168.1.1.1 ↗ alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7 0.69 52.0 3.72e-01 100.0% 26.2%
4464616 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.68 44.0 3.96e-01 86.4% 48.9%
4567993 632.21.1.2 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › FIVAR 0.68 40.0 4.02e-01 84.8% 58.5%
3904232 101.1.2.37 ↗ alpha arrays › HTH › HTH › winged helix domain › E2F_TDP 0.67 59.0 5.15e-01 100.0% 74.0%
4440860 632.21.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › Helical bundle domain in endo-beta-N-acetylglucosaminidase F2 › DUF7917 0.66 41.0 3.54e-01 86.4% 41.0%
3629288 101.1.10.34 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N+CycT2-like_C 0.66 55.0 3.84e-01 92.4% 29.8%
4136321 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 54.0 5.52e-01 90.9% 93.8%
3701328 109.4.1.1362 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COG5_C 0.66 40.0 3.15e-01 83.3% 30.8%
3765 601.26.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like › DUF1798 0.65 44.0 3.55e-01 87.9% 38.3%
5045083 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 55.0 4.06e-01 100.0% 40.5%
4041623 632.2.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains › FIVAR 0.64 40.0 3.89e-01 86.4% 56.0%
3800176 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 42.0 3.96e-01 100.0% 54.1%
3970129 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.63 55.0 3.57e-01 97.0% 70.7%
3852 622.2.1.1 ↗ alpha bundles › YvfG-like › YvfG-like › YvfG-like › YvfG 0.62 55.0 5.52e-01 95.5% 98.5%
4017134 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.08e-01 92.4% 61.5%
3439489 101.1.17.2 ↗ alpha arrays › HTH › HTH › FF domain › FF 0.62 50.0 4.58e-01 100.0% 66.7%
4467337 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.62 52.0 4.10e-01 100.0% 44.3%
3416051 101.21.1.2 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › Nucleolin_bd 0.62 52.0 5.29e-01 100.0% 98.5%
4594071 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.62 53.0 4.85e-01 93.9% 84.7%
4600921 304.41.1.0 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain 0.61 52.0 4.00e-01 100.0% 40.6%
4476425 304.41.1.1 ↗ a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N 0.61 52.0 4.06e-01 100.0% 43.4%
3696367 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 52.0 5.07e-01 100.0% 88.0%
4975282 545.1.2.0 ↗ alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.60 50.0 4.80e-01 100.0% 80.0%
3634198 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 50.0 5.07e-01 100.0% 100.0%
3929910 101.1.2.507 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_TANC1 0.59 51.0 3.97e-01 100.0% 44.5%
3995656 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 51.0 3.93e-01 100.0% 50.6%
3279834 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.59 50.0 4.01e-01 100.0% 50.7%
3619171 189.1.1.2 ↗ alpha bundles › GTPase activation domain, GAP › GTPase activation domain, GAP › GTPase activation domain, GAP › RhoGAP 0.58 51.0 3.57e-01 100.0% 55.2%
3283379 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.58 50.0 4.37e-01 100.0% 81.9%
5042704 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 47.0 4.78e-01 93.9% 95.4%
3972353 503.1.1.0 ↗ extended segments › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein › N-terminal domain of bifunctional PutA protein 0.57 45.0 3.73e-01 86.4% 90.8%
3193451 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 49.0 3.46e-01 98.5% 56.0%
5005238 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.57 47.0 2.88e-01 97.0% 14.5%
3283519 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.57 39.0 3.21e-01 72.7% 59.2%
3391605 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 46.0 4.66e-01 95.5% 98.5%
3979252 601.46.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Regulatory CZB domain of diguanylate cyclase YdeH › Regulatory CZB domain of diguanylate cyclase YdeH › CZB 0.56 46.0 3.89e-01 90.9% 60.0%
3513623 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.56 48.0 3.66e-01 100.0% 49.7%
3809406 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.56 43.0 3.87e-01 90.9% 74.3%
3194871 186.1.1.17 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Arb1 0.55 47.0 3.89e-01 98.5% 53.3%
5053357 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.55 44.0 3.41e-01 100.0% 39.3%
3233966 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 47.0 3.59e-01 100.0% 47.9%
3866248 4163.1.1.5 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Use1 0.54 45.0 4.46e-01 90.9% 87.1%
3592 632.12.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 0.54 40.0 3.56e-01 77.3% 57.3%
5063633 4163.1.1.0 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like 0.53 45.0 3.68e-01 93.9% 55.2%
3610147 3755.1.1.0 ↗ alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related 0.53 41.0 3.03e-01 81.8% 93.3%
3511626 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.53 46.0 3.46e-01 98.5% 92.4%
4943470 4163.1.1.7 ↗ alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Gins51_C 0.53 44.0 3.60e-01 90.9% 57.5%
3243187 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 38.0 3.30e-01 77.3% 87.6%
3813149 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.52 46.0 2.94e-01 97.0% 74.0%
3590548 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.52 43.0 3.11e-01 98.5% 75.6%
3783902 604.33.1.5 ↗ alpha bundles › Spectrin repeat-like › Repulsive guidance molecule (RGM) N-terminal domain › Repulsive guidance molecule (RGM) N-terminal domain › PF29141 0.52 40.0 3.94e-01 89.4% 77.1%
3723892 5059.1.1.3 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › TPT 0.51 47.0 3.02e-01 100.0% 65.2%
3715812 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 44.0 3.20e-01 100.0% 46.3%
4045754 110.1.1.18 ↗ alpha arrays › DEATH domain › DEATH domain › DEATH domain › Death_Lrrd1 0.51 38.0 3.34e-01 81.8% 77.1%