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PH2015_18_scaffold_2_prodigal-single.1__X__X__00132

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00132

Identity

Kingdom:
phage

Quality

75.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-81
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rrkA03 3.30.70.2750 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.81 62.0 6.33e-01 100.0% 83.8%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 59.0 5.26e-01 100.0% 64.8%
2lqjA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 58.0 5.43e-01 100.0% 73.4%
4qbuA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.69 51.0 5.36e-01 100.0% 89.4%
1qpoA01 3.90.1170.20 Alpha Beta › Alpha-Beta Complex › Aldehyde Oxidoreductase; domain 3 › Quinolinate phosphoribosyl transferase, N-terminal domain 0.69 59.0 5.07e-01 100.0% 60.5%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 58.0 5.28e-01 100.0% 71.8%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 58.0 5.19e-01 100.0% 69.8%
7x0fA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.65 58.0 4.68e-01 100.0% 84.5%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 56.0 5.14e-01 100.0% 71.6%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 5.01e-01 100.0% 76.4%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 56.0 5.05e-01 100.0% 70.5%
3pm9A03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 58.0 4.94e-01 100.0% 72.7%
6lpnA03 3.30.70.2190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 57.0 5.03e-01 100.0% 77.2%
1dfaA03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.62 49.0 4.56e-01 96.1% 68.4%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.62 55.0 4.39e-01 100.0% 52.6%
1fu0A00 3.30.1340.10 Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › HPr-like 0.61 52.0 5.07e-01 98.7% 93.1%
3wy7D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.61 54.0 4.67e-01 100.0% 71.7%
1vmbA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.60 53.0 4.76e-01 100.0% 76.6%
3rrkA01 3.30.70.2170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 48.0 4.91e-01 100.0% 93.1%
6ahuH01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.60 52.0 4.88e-01 100.0% 77.9%
4bbyB04 3.30.70.3450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 53.0 4.78e-01 100.0% 79.8%
6vydA01 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 48.0 3.27e-01 89.5% 30.5%
1cqmA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.59 51.0 4.79e-01 100.0% 80.6%
3nwrA01 3.30.70.150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain 0.59 52.0 4.54e-01 100.0% 85.6%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.59 50.0 4.98e-01 100.0% 97.5%
3i4hX01 3.30.70.1890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 49.0 4.29e-01 100.0% 80.5%
1x9zA02 3.30.1370.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › MutL, C-terminal domain, regulatory subdomain 0.58 43.0 4.15e-01 100.0% 69.7%
6k2eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.01e-01 100.0% 77.9%
6w6vE01 3.30.70.3250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribonuclease P, Pop5 subunit 0.57 51.0 4.07e-01 100.0% 63.2%
1xtzA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 50.0 4.88e-01 100.0% 94.0%
1zd0A01 3.30.2380.10 Alpha Beta › 2-Layer Sandwich › PF0523-like › CGI121/TPRKB 0.57 50.0 4.23e-01 100.0% 80.8%
4g6vB00 3.30.70.2920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 49.0 4.49e-01 100.0% 82.5%
5eltA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.57 49.0 4.07e-01 100.0% 69.9%
4hacA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.56 49.0 4.17e-01 100.0% 96.1%
1wvfA01 3.30.43.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 0.56 48.0 4.24e-01 93.4% 66.7%
2rkvA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.55 48.0 3.53e-01 100.0% 85.0%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.54 47.0 3.97e-01 100.0% 59.0%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.56e-01 73.7% 74.2%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.54 40.0 4.24e-01 81.6% 100.0%
6lbsB01 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.53 41.0 4.09e-01 84.2% 79.7%
2llzA01 3.30.70.2360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 4.25e-01 100.0% 80.0%
5ijgA01 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 44.0 3.33e-01 100.0% 82.6%
4hjhA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.52 44.0 4.11e-01 100.0% 93.1%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.52 45.0 3.27e-01 100.0% 43.6%
1jwqA00 3.40.630.40 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn-dependent exopeptidases 0.52 44.0 3.44e-01 100.0% 82.1%
5t5sA01 3.10.310.40 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.51 38.0 3.32e-01 100.0% 48.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947208 304.134.1.2 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like › ArgZ-like_C_1st 0.73 62.0 6.29e-01 100.0% 93.3%
148700 304.12.1.2 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › MgtC_SapB_C 0.70 58.0 5.43e-01 100.0% 73.4%
3703942 304.126.1.1 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.70 62.0 5.59e-01 100.0% 71.4%
4976823 305.2.1.0 a+b two layers › DCoH-like › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) › Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH) 0.70 55.0 5.61e-01 100.0% 86.7%
4989167 304.134.1.0 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.68 60.0 5.59e-01 100.0% 78.9%
4980972 304.134.1.0 a+b two layers › Alpha-beta plaits › MJ1480-like › MJ1480-like 0.68 60.0 5.86e-01 100.0% 89.4%
3278355 327.16.1.0 a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system 0.67 57.0 5.70e-01 100.0% 91.0%
3440465 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 57.0 5.13e-01 100.0% 90.0%
5075084 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 58.0 5.57e-01 100.0% 90.6%
4991988 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.63 49.0 5.05e-01 100.0% 91.4%
4996937 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.63 57.0 5.41e-01 100.0% 87.8%
4989036 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.63 57.0 5.42e-01 100.0% 92.2%
4030190 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.62 55.0 4.61e-01 100.0% 74.4%
4935929 329.1.1.0 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain 0.62 56.0 5.20e-01 100.0% 83.2%
4058358 327.11.2.26 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_N4BP1_1st 0.62 54.0 5.38e-01 100.0% 96.2%
5035849 3501.1.1.0 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.61 48.0 4.79e-01 100.0% 83.5%
4387283 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.61 55.0 5.24e-01 100.0% 86.7%
3596971 4340.1.1.0 a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.61 47.0 4.82e-01 100.0% 86.7%
1487486 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 54.0 5.00e-01 100.0% 87.8%
4024298 331.9.1.3 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_b_Cpla 0.60 52.0 4.20e-01 98.7% 85.2%
3794868 304.113.1.1 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain › GATase_2 0.60 53.0 4.66e-01 100.0% 81.7%
3932888 304.8.1.71 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7636 0.60 54.0 4.91e-01 100.0% 96.0%
4033923 821.1.1.0 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.60 43.0 3.86e-01 76.3% 78.9%
3621702 327.11.2.30 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › DUF7636 0.60 52.0 4.69e-01 100.0% 89.0%
3740762 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.59 52.0 4.73e-01 100.0% 75.2%
3831462 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 51.0 3.72e-01 100.0% 39.6%
3917491 331.4.1.5 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › KA1_BRSK 0.59 51.0 4.28e-01 100.0% 84.4%
3234452 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 50.0 4.81e-01 100.0% 84.4%
4201083 304.12.1.1 a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 › Ribosomal_S6 0.58 50.0 4.65e-01 100.0% 80.0%
987926 304.15.1.5 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain › CDI_Immunity_Comp 0.58 50.0 4.67e-01 100.0% 85.0%
4147445 304.160.1.1 a+b two layers › Alpha-beta plaits › Gas vesicle protein GvpF › Gas vesicle protein GvpF › GvpL_GvpF 0.58 50.0 4.12e-01 100.0% 83.4%
3474713 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 51.0 4.77e-01 100.0% 86.3%
3695778 331.4.1.0 a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.58 49.0 4.11e-01 100.0% 96.6%
4629040 327.11.2.24 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_12 0.57 50.0 4.56e-01 100.0% 77.1%
4438218 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 49.0 4.38e-01 98.7% 76.4%
4024758 304.8.1.99 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › PF26946 0.57 43.0 4.49e-01 96.1% 90.0%
5074169 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.56 48.0 4.25e-01 100.0% 92.5%
3822370 304.163.1.2 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › ACT_13 0.56 49.0 4.69e-01 100.0% 88.9%
4380033 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.56 48.0 4.74e-01 100.0% 98.8%
3732624 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.55 45.0 4.00e-01 97.4% 80.0%
4168404 327.11.2.62 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › Snu56_snRNP 0.55 48.0 4.24e-01 100.0% 78.3%
3720893 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.55 48.0 4.07e-01 100.0% 80.0%
3505044 304.24.1.16 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › PrmA 0.55 47.0 4.42e-01 100.0% 81.1%
4522346 2003.1.5.17 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_5 0.54 41.0 3.04e-01 85.5% 29.5%
3947199 304.126.1.5 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › PrmA 0.53 46.0 4.29e-01 100.0% 77.0%
3732445 304.4.1.11 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › EthD 0.53 45.0 4.12e-01 100.0% 93.6%
161934 213.1.1.43 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › FeeM 0.53 35.0 2.69e-01 88.2% 27.1%
3188529 327.11.2.45 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29031 0.53 46.0 4.33e-01 100.0% 81.1%
3403608 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.53 45.0 4.50e-01 100.0% 95.0%
3697214 327.11.2.45 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF29031 0.51 44.0 4.10e-01 100.0% 89.0%
4431446 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.50 36.0 2.80e-01 75.0% 93.3%