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PH2015_18_scaffold_2_prodigal-single.1__X__X__00141
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00141
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-93
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wxrA03 | 3.30.160.280 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.58 | 40.0 | 4.10e-01 | 73.1% | 77.6% |
| 5dynA01 | 3.40.50.11970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 39.0 | 3.58e-01 | 75.6% | 57.5% |
| 1ek9A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 46.0 | 2.88e-01 | 93.6% | 64.7% |
| 2n6eA00 | 3.40.1530.20 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1805 › Protein of unknown function (DUF1491) | 0.54 | 36.0 | 3.28e-01 | 75.6% | 49.1% |
| 4hcsA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 32.0 | 3.44e-01 | 78.2% | 73.1% |
| 1quqB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.50 | 37.0 | 3.38e-01 | 82.1% | 91.2% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3520868 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 46.0 | 3.82e-01 | 91.0% | 59.3% |
| 3967666 | 2484.1.1.251 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF26691 | 0.54 | 41.0 | 2.95e-01 | 83.3% | 35.5% |
| 3521199 | 220.1.1.26 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Vps36_ESCRT-II | 0.54 | 38.0 | 3.34e-01 | 76.9% | 53.1% |
| 5012656 | 330.5.1.0 ↗ | a+b two layers › dsRBD-like › Bacillus phage protein › Bacillus phage protein | 0.53 | 36.0 | 3.56e-01 | 70.5% | 65.9% |
| 3468117 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 40.0 | 3.15e-01 | 83.3% | 40.0% |
| 3521467 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.52 | 32.0 | 3.11e-01 | 92.3% | 53.3% |
| 4979281 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.51 | 36.0 | 2.65e-01 | 75.6% | 28.5% |
| 4929294 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.51 | 42.0 | 3.32e-01 | 96.2% | 46.1% |
| 4793418 | 304.48.1.0 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like | 0.50 | 36.0 | 2.53e-01 | 76.9% | 93.1% |
| None | — | 0.50 | 41.0 | 2.78e-01 | 97.4% | 61.4% |