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PH2015_18_scaffold_2_prodigal-single.1__X__X__00195
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00195
Identity
- Kingdom:
- phage
Quality
78.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-91
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hvqC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.75 | 65.0 | 5.36e-01 | 94.7% | 67.3% |
| 4yiiA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 56.0 | 5.28e-01 | 94.7% | 94.4% |
| 1on2A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 5.25e-01 | 94.7% | 80.6% |
| 1lvaA04 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 56.0 | 5.54e-01 | 94.7% | 95.0% |
| 4h0eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 53.0 | 5.02e-01 | 94.7% | 92.9% |
| 3lstA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 4.61e-01 | 93.0% | 67.4% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 48.0 | 4.25e-01 | 91.2% | 60.0% |
| 2wteA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.67e-01 | 91.2% | 79.2% |
| 1ornA02 | 1.10.1670.10 | Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) | 0.61 | 51.0 | 4.30e-01 | 94.7% | 68.0% |
| 3m8eA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 48.0 | 4.10e-01 | 91.2% | 65.3% |
| 2g19A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.59 | 47.0 | 3.31e-01 | 96.5% | 83.3% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 46.0 | 4.37e-01 | 94.7% | 83.6% |
| 3a2vD02 | 3.30.1020.10 | Alpha Beta › 2-Layer Sandwich › Antioxidant, Horf6; Chain A, domain 2 › Antioxidant, Horf6; Chain A, domain2 | 0.57 | 37.0 | 3.12e-01 | 94.7% | 40.0% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.57 | 44.0 | 2.94e-01 | 93.0% | 65.4% |
| 2q4aA00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.55 | 45.0 | 2.93e-01 | 100.0% | 84.4% |
| 3if4A02 | 1.20.5.1210 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Integron cassette protein helical domain | 0.55 | 38.0 | 4.08e-01 | 71.9% | 95.7% |
| 3w1yB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 44.0 | 3.59e-01 | 93.0% | 92.3% |
| 4eoyB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 42.0 | 3.32e-01 | 93.0% | 91.1% |
| 2qh9A00 | 3.30.2170.10 | Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily | 0.51 | 39.0 | 2.96e-01 | 94.7% | 79.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4679870 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 59.0 | 5.05e-01 | 96.5% | 68.4% |
| 5011851 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 57.0 | 5.25e-01 | 98.2% | 70.7% |
| 4360928 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.69 | 59.0 | 5.55e-01 | 98.2% | 92.9% |
| 4187927 | 101.1.2.39 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA | 0.68 | 57.0 | 5.37e-01 | 96.5% | 95.7% |
| 5017954 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 56.0 | 5.33e-01 | 96.5% | 81.4% |
| 4993180 | 183.1.1.1 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Fe_dep_repr_C | 0.67 | 55.0 | 4.32e-01 | 94.7% | 41.5% |
| 3370400 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.27e-01 | 96.5% | 87.1% |
| 5008624 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 51.0 | 4.75e-01 | 98.2% | 68.0% |
| 4420420 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 55.0 | 4.81e-01 | 98.2% | 75.6% |
| 4544555 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 49.0 | 3.91e-01 | 84.2% | 47.2% |
| 5040941 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 53.0 | 4.45e-01 | 93.0% | 82.0% |
| 3237702 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 51.0 | 4.57e-01 | 91.2% | 63.5% |
| 3338320 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.62 | 49.0 | 5.02e-01 | 96.5% | 94.5% |
| 5039734 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 46.0 | 4.50e-01 | 91.2% | 75.0% |
| 4047193 | 101.1.2.385 ↗ | alpha arrays › HTH › HTH › winged helix domain › HRQ1_WHD | 0.61 | 48.0 | 4.59e-01 | 96.5% | 74.3% |
| 3275926 | 101.1.2.304 ↗ | alpha arrays › HTH › HTH › winged helix domain › E3_UFM1_ligase | 0.61 | 47.0 | 4.86e-01 | 91.2% | 100.0% |
| 5054274 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 48.0 | 3.45e-01 | 94.7% | 81.6% |
| 4940103 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 4.47e-01 | 98.2% | 75.7% |
| 4027144 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 48.0 | 4.15e-01 | 94.7% | 58.9% |
| 4599024 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.58 | 44.0 | 4.01e-01 | 87.7% | 83.5% |
| 3373098 | 109.3.1.142 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DUF547 | 0.56 | 46.0 | 3.24e-01 | 96.5% | 65.5% |
| 3413888 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 44.0 | 3.96e-01 | 94.7% | 75.3% |
| 3939641 | 2484.1.1.104 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 | 0.53 | 42.0 | 2.90e-01 | 93.0% | 71.1% |
| 3969385 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 41.0 | 3.79e-01 | 94.7% | 68.8% |
| 5061644 | 304.11.1.15 ↗ | a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Peptidase_S8 | 0.51 | 37.0 | 3.22e-01 | 80.7% | 57.9% |
| 1391240 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.51 | 40.0 | 3.91e-01 | 94.7% | 77.8% |
| 4224334 | 2004.1.1.128 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PAXNEB | 0.51 | 43.0 | 2.85e-01 | 98.2% | 31.5% |
| 1883340 | 101.1.2.211 ↗ | alpha arrays › HTH › HTH › winged helix domain › PKMT_2nd | 0.50 | 40.0 | 3.32e-01 | 91.2% | 66.4% |