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PH2015_18_scaffold_2_prodigal-single.1__X__X__00251
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00251
Identity
- Kingdom:
- phage
Quality
94.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-56
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3tacB02 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.68 | 54.0 | 4.79e-01 | 88.9% | 67.5% |
| 1p4wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 53.0 | 4.59e-01 | 88.9% | 70.1% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.66 | 56.0 | 4.79e-01 | 100.0% | 83.0% |
| 2n80A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.66 | 48.0 | 4.05e-01 | 79.6% | 68.1% |
| 2lvsA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.66 | 50.0 | 5.01e-01 | 85.2% | 85.7% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 52.0 | 4.77e-01 | 94.4% | 77.6% |
| 6v7xB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 50.0 | 5.00e-01 | 88.9% | 100.0% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 51.0 | 4.82e-01 | 92.6% | 89.6% |
| 6cc0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 50.0 | 4.69e-01 | 94.4% | 85.7% |
| 2xz2A00 | 1.20.960.50 | Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Cleavage stimulation factor subunit 1, dimerisation domain | 0.60 | 44.0 | 4.13e-01 | 100.0% | 65.2% |
| 4yifF00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 48.0 | 3.85e-01 | 100.0% | 53.8% |
| 6uglB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 50.0 | 4.92e-01 | 98.1% | 96.6% |
| 1zv1A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.56 | 37.0 | 3.68e-01 | 83.3% | 64.4% |
| 1ccdA00 | 1.10.210.10 | Mainly Alpha › Orthogonal Bundle › Uteroglobin › Secretoglobin | 0.56 | 45.0 | 4.15e-01 | 98.1% | 72.7% |
| 7dl9A01 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.55 | 43.0 | 2.95e-01 | 85.2% | 76.3% |
| 1on2A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.53 | 42.0 | 4.01e-01 | 85.2% | 82.5% |
| 2lklA01 | 1.10.1900.40 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Acidic terminal segments, variant surface antigen of PfEMP1 | 0.53 | 39.0 | 3.62e-01 | 83.3% | 86.1% |
| 3d8lA00 | 1.10.8.940 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 | 0.52 | 41.0 | 3.53e-01 | 87.0% | 61.5% |
| 7vhqU01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.52 | 42.0 | 3.40e-01 | 90.7% | 84.5% |
| 1nv8B01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.51 | 37.0 | 3.53e-01 | 83.3% | 71.8% |
| 2qqyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 37.0 | 2.91e-01 | 85.2% | 81.9% |
| 5dvwA00 | 1.20.120.1160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 39.0 | 3.03e-01 | 87.0% | 38.6% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3280314 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.80 | 56.0 | 5.61e-01 | 74.1% | 76.4% |
| 3290277 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.77 | 59.0 | 6.07e-01 | 81.5% | 90.0% |
| 4608916 | 101.1.8.1 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase | 0.70 | 52.0 | 5.22e-01 | 79.6% | 80.0% |
| 3693390 | 101.1.6.0 ↗ | alpha arrays › HTH › HTH › TrpR | 0.70 | 57.0 | 5.53e-01 | 90.7% | 85.0% |
| 3976103 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.69 | 57.0 | 5.36e-01 | 90.7% | 92.3% |
| 4009970 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.69 | 56.0 | 5.29e-01 | 90.7% | 89.2% |
| 4993585 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 50.0 | 4.88e-01 | 77.8% | 76.7% |
| 5034573 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.68 | 51.0 | 3.74e-01 | 81.5% | 42.8% |
| 4968115 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 55.0 | 5.14e-01 | 94.4% | 88.6% |
| 4131887 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.67 | 55.0 | 4.87e-01 | 92.6% | 74.7% |
| 3964047 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 54.0 | 4.41e-01 | 96.3% | 88.2% |
| 3964524 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.66 | 54.0 | 3.86e-01 | 96.3% | 92.6% |
| 5060354 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.33e-01 | 100.0% | 95.4% |
| 3963336 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.66 | 53.0 | 3.66e-01 | 96.3% | 94.0% |
| 3969872 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 45.0 | 4.72e-01 | 74.1% | 96.0% |
| 4973490 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.65 | 48.0 | 4.48e-01 | 83.3% | 74.3% |
| 4153644 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.65 | 52.0 | 5.12e-01 | 94.4% | 98.3% |
| 3374351 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.65 | 48.0 | 4.93e-01 | 81.5% | 98.0% |
| 3971154 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.64 | 52.0 | 4.91e-01 | 96.3% | 85.7% |
| 4464384 | 198.2.1.1 ↗ | alpha arrays › Saposin-like › Bacteriocin AS-48-related › Bacteriocin AS-48-related › Bacteriocin_IId | 0.64 | 54.0 | 5.04e-01 | 98.1% | 95.7% |
| 3976506 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.63 | 51.0 | 4.63e-01 | 90.7% | 76.0% |
| 3185127 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.63 | 46.0 | 4.45e-01 | 83.3% | 100.0% |
| 4958468 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.62 | 49.0 | 4.85e-01 | 94.4% | 91.7% |
| 4007717 | 101.1.3.1 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › GerE | 0.62 | 50.0 | 4.51e-01 | 94.4% | 75.0% |
| 3598924 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.60 | 50.0 | 3.76e-01 | 100.0% | 41.3% |
| 3201922 | 101.1.3.15 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Myb_DNA-binding | 0.59 | 45.0 | 4.28e-01 | 87.0% | 76.9% |
| 4224167 | 7000.1.1.0 ↗ | alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS | 0.58 | 50.0 | 4.91e-01 | 98.1% | 90.0% |
| 4978611 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.58 | 49.0 | 3.42e-01 | 100.0% | 78.5% |
| 5011873 | 4156.1.1.6 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Helicase_dom4_arc | 0.58 | 42.0 | 3.15e-01 | 85.2% | 40.0% |
| 3279224 | 101.32.1.1 ↗ | alpha arrays › HTH › bacterioferritin-associated ferredoxin › bacterioferritin-associated ferredoxin › Fer2_BFD | 0.57 | 41.0 | 4.10e-01 | 77.8% | 98.2% |
| 4079594 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.56 | 40.0 | 3.62e-01 | 75.9% | 68.0% |
| 4344927 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.55 | 41.0 | 3.89e-01 | 85.2% | 77.1% |
| 4251730 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.55 | 38.0 | 3.59e-01 | 75.9% | 65.7% |
| 3654606 | 1128.1.1.1 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR | 0.54 | 41.0 | 3.76e-01 | 87.0% | 66.7% |
| 3604236 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.65e-01 | 83.3% | 61.3% |
| 4517409 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.52 | 39.0 | 3.66e-01 | 83.3% | 72.9% |