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PH2015_18_scaffold_2_prodigal-single.1__X__X__00262

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00262

Identity

Kingdom:
phage

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-78
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ui3A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 49.0 4.51e-01 100.0% 62.2%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.64 44.0 4.32e-01 71.1% 72.3%
2diuA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 46.0 4.68e-01 100.0% 79.5%
1xviA02 3.30.980.20 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Putative mannosyl-3-phosphoglycerate phosphatase; domain 2 0.62 49.0 4.59e-01 85.5% 100.0%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 4.02e-01 100.0% 58.2%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 42.0 3.84e-01 100.0% 53.4%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.61 45.0 4.59e-01 100.0% 83.3%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.58 43.0 4.43e-01 100.0% 84.5%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 41.0 4.31e-01 86.8% 83.8%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.58 38.0 3.86e-01 100.0% 67.5%
7uvpA02 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.58 41.0 4.33e-01 100.0% 84.1%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.58 40.0 3.19e-01 84.2% 35.0%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 43.0 4.03e-01 100.0% 66.0%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 34.0 3.76e-01 82.9% 75.0%
4bndA02 3.30.1240.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain 0.57 42.0 3.96e-01 80.3% 99.0%
2gqfA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.22e-01 90.8% 71.1%
1bbyA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.72e-01 92.1% 71.0%
2gqcA01 3.30.70.2080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 37.0 4.09e-01 100.0% 94.6%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 34.0 3.56e-01 77.6% 66.7%
2b0lC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 40.0 3.77e-01 77.6% 78.7%
2l01A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 35.0 3.57e-01 86.8% 64.9%
1r1tA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.59e-01 96.1% 59.2%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 34.0 3.60e-01 86.8% 72.7%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 38.0 3.76e-01 98.7% 69.4%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 40.0 3.86e-01 98.7% 70.0%
5iceA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.45e-01 97.4% 55.4%
3r5gA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 47.0 3.51e-01 100.0% 40.0%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 46.0 3.42e-01 100.0% 37.6%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 38.0 3.69e-01 77.6% 82.8%
4q5eA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 34.0 3.50e-01 90.8% 68.0%
2qv6B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 41.0 3.57e-01 100.0% 54.1%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.60e-01 98.7% 63.8%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.57e-01 98.7% 66.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.52e-01 98.7% 61.3%
7xhzA01 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 38.0 3.37e-01 81.6% 100.0%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 44.0 3.34e-01 96.1% 90.1%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 34.0 3.58e-01 85.5% 75.4%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.52e-01 97.4% 65.5%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 38.0 3.62e-01 97.4% 66.7%
4gyiA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.52e-01 97.4% 63.4%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.52 29.0 3.25e-01 77.6% 70.2%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.51e-01 90.8% 70.7%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 37.0 3.74e-01 75.0% 77.0%
8k1fC01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 42.0 3.14e-01 90.8% 84.2%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.54e-01 100.0% 66.7%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.74e-01 88.2% 75.0%
2o0bA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.50 39.0 2.80e-01 81.6% 90.7%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.68e-01 88.2% 67.7%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 36.0 3.60e-01 94.7% 75.0%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 3.76e-01 88.2% 81.3%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4260479 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.72 46.0 3.27e-01 80.3% 22.8%
3895826 327.11.2.46 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_4 0.63 46.0 4.86e-01 100.0% 90.8%
4241985 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.62 49.0 3.36e-01 85.5% 41.9%
4295057 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.62 49.0 3.36e-01 85.5% 41.9%
3596028 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 37.0 3.64e-01 85.5% 55.0%
3711450 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.62 42.0 4.16e-01 96.1% 66.3%
3706636 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.62 37.0 3.71e-01 85.5% 57.5%
4956478 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 40.0 4.29e-01 98.7% 78.5%
3896924 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.61 53.0 3.95e-01 100.0% 95.1%
3892181 304.8.1.85 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › KH_PARP14_4 0.60 45.0 4.70e-01 100.0% 88.6%
5069565 304.26.1.0 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like 0.60 42.0 3.95e-01 100.0% 58.9%
3600397 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 44.0 4.42e-01 100.0% 76.2%
4090279 304.36.1.1 ↗ a+b two layers › Alpha-beta plaits › YajQ-like › YajQ-like › DUF520 0.60 43.0 4.20e-01 76.3% 74.1%
3225058 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.59 42.0 2.84e-01 94.7% 17.8%
4465068 140.1.1.14 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e 0.59 41.0 2.93e-01 71.1% 25.1%
3717644 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.59 44.0 4.46e-01 100.0% 81.3%
3564195 327.11.2.46 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_4 0.59 45.0 4.75e-01 100.0% 96.9%
3824278 101.1.2.132 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF3591 0.59 41.0 4.04e-01 98.7% 67.1%
5049614 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 42.0 4.11e-01 88.2% 69.4%
3920426 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.58 52.0 3.79e-01 100.0% 94.6%
3586847 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.57 48.0 4.74e-01 90.8% 87.5%
3654295 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 37.0 3.58e-01 94.7% 56.8%
5060973 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 42.0 3.95e-01 98.7% 64.2%
2417935 101.1.2.192 ↗ alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.56 40.0 4.20e-01 85.5% 84.3%
5040489 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 4.02e-01 100.0% 70.0%
5027113 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 39.0 3.91e-01 97.4% 72.5%
4994983 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 38.0 3.99e-01 96.1% 80.0%
5067549 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 37.0 3.88e-01 92.1% 80.0%
3987638 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.55 45.0 3.63e-01 100.0% 46.0%
3279128 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.55 33.0 3.42e-01 85.5% 62.9%
5037969 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.55e-01 93.4% 61.2%
3784067 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.55 40.0 3.46e-01 77.6% 69.2%
5028855 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 39.0 3.82e-01 86.8% 68.2%
3213375 5001.1.1.44 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srv 0.54 42.0 2.86e-01 84.2% 72.8%
4335903 304.48.1.22 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GCH_III 0.54 41.0 3.69e-01 100.0% 58.2%
5077786 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.53 40.0 3.91e-01 98.7% 72.9%
4244937 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.53 44.0 3.02e-01 96.1% 91.8%
3951867 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 39.0 3.53e-01 98.7% 55.0%
3716093 101.1.2.169 ↗ alpha arrays › HTH › HTH › winged helix domain › PheRS_DBD3 0.53 38.0 3.40e-01 86.8% 52.7%
4967161 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 39.0 3.88e-01 97.4% 76.2%
5003129 101.1.2.78 ↗ alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.53 33.0 3.45e-01 85.5% 70.8%
5006082 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 37.0 4.10e-01 84.2% 100.0%
4968723 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.31e-01 86.8% 49.2%
5059445 101.1.2.751 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.52 44.0 4.19e-01 97.4% 81.7%
3249236 4207.1.2.93 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RNA12 0.52 40.0 2.96e-01 98.7% 29.8%
3615681 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 38.0 3.41e-01 78.9% 58.2%
3713916 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 45.0 4.14e-01 100.0% 79.0%
138578 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 38.0 3.58e-01 98.7% 62.5%
5081465 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 38.0 3.55e-01 88.2% 62.0%
3283252 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.51 37.0 3.35e-01 98.7% 54.5%
4963651 101.1.2.926 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7346 0.51 39.0 3.78e-01 84.2% 82.4%
4977845 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.96e-01 86.8% 93.8%
5020805 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 38.0 3.56e-01 88.2% 63.0%
3632793 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.50 42.0 3.95e-01 100.0% 77.0%
3698543 101.1.2.309 ↗ alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.50 43.0 3.93e-01 100.0% 76.2%