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PH2015_18_scaffold_2_prodigal-single.1__X__X__00277
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00277
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-148
Domain cluster:
rep: SRR1747026_scaffold_22_prodigal-single.1__X__X__00189__D3-187
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.80 | 27.0 | 4.84e-01 | 82.6% | 95.7% |
| 3jygA00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.79 | 69.0 | 6.25e-01 | 91.3% | 97.2% |
| 1y13A00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.77 | 67.0 | 6.31e-01 | 92.0% | 96.9% |
| 2dj6B00 | 3.30.479.10 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD | 0.76 | 59.0 | 6.43e-01 | 90.6% | 96.5% |
| 7vhqU01 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.69 | 50.0 | 5.56e-01 | 83.3% | 93.6% |
| 2r5rA00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.66 | 56.0 | 4.53e-01 | 92.0% | 50.0% |
| 4mb8D00 | 3.10.270.10 | Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; | 0.65 | 59.0 | 4.57e-01 | 97.1% | 56.2% |
| 2zuoA10 | 3.30.479.30 | Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain | 0.60 | 46.0 | 5.03e-01 | 82.6% | 97.4% |
| 1jpdX01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.56 | 32.0 | 3.64e-01 | 86.2% | 74.7% |
| 5aj3E01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 28.0 | 3.40e-01 | 73.9% | 77.8% |
| 4k7rA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.54 | 28.0 | 3.51e-01 | 91.3% | 84.4% |
| 5xd7A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 34.0 | 3.52e-01 | 85.5% | 70.1% |
| 8in8C01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 38.0 | 3.11e-01 | 91.3% | 40.1% |
| 5azpA02 | 2.20.200.10 | Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.52 | 29.0 | 3.57e-01 | 92.8% | 90.1% |
| 4bq6F00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 30.0 | 2.95e-01 | 95.7% | 54.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4966109 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.84 | 72.0 | 7.42e-01 | 89.1% | 98.5% |
| 4951815 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.84 | 74.0 | 7.50e-01 | 91.3% | 97.0% |
| 4664742 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.84 | 72.0 | 7.36e-01 | 89.9% | 97.8% |
| 4935598 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.83 | 72.0 | 7.49e-01 | 91.3% | 98.5% |
| 161965 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.79 | 57.0 | 6.45e-01 | 90.6% | 96.2% |
| 4034010 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.79 | 65.0 | 6.89e-01 | 90.6% | 95.2% |
| 5752 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.77 | 67.0 | 6.33e-01 | 92.0% | 96.9% |
| 5066458 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.77 | 67.0 | 6.48e-01 | 91.3% | 98.7% |
| 4981604 | 230.1.1.3 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS | 0.76 | 67.0 | 6.42e-01 | 92.8% | 99.4% |
| 4940518 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.74 | 48.0 | 5.68e-01 | 83.3% | 94.7% |
| 3700069 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.73 | 53.0 | 5.80e-01 | 84.1% | 89.6% |
| 3597939 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.73 | 53.0 | 5.48e-01 | 84.1% | 79.2% |
| 3333427 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.72 | 53.0 | 4.80e-01 | 84.1% | 57.8% |
| 5046273 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.72 | 47.0 | 5.12e-01 | 83.3% | 79.8% |
| 5055024 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.72 | 47.0 | 5.51e-01 | 82.6% | 95.8% |
| 5064380 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.71 | 46.0 | 5.31e-01 | 82.6% | 89.9% |
| 5054328 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.70 | 46.0 | 5.38e-01 | 83.3% | 95.8% |
| 5081221 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.70 | 46.0 | 5.18e-01 | 83.3% | 87.6% |
| 5057792 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.70 | 46.0 | 5.42e-01 | 84.1% | 96.8% |
| 5070793 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.69 | 45.0 | 5.37e-01 | 83.3% | 95.8% |
| 5037408 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.69 | 47.0 | 5.32e-01 | 84.1% | 91.4% |
| 5078865 | 5084.1.1.0 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like | 0.69 | 33.0 | 3.40e-01 | 90.6% | 46.7% |
| 4460725 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.68 | 45.0 | 5.28e-01 | 83.3% | 95.8% |
| 5059432 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.68 | 53.0 | 5.63e-01 | 84.8% | 92.5% |
| 3700023 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.68 | 49.0 | 5.22e-01 | 83.3% | 85.8% |
| 3355174 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.68 | 49.0 | 5.22e-01 | 83.3% | 85.8% |
| 5010097 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.67 | 51.0 | 5.62e-01 | 83.3% | 94.8% |
| 5058343 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.67 | 50.0 | 5.26e-01 | 83.3% | 85.6% |
| 3599340 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.66 | 48.0 | 4.93e-01 | 83.3% | 77.0% |
| 3362248 | 632.3.1.20 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Phosphoprotein XD domain › Phosphoprotein XD domain › PF28698 | 0.66 | 23.0 | 4.00e-01 | 81.2% | 92.0% |
| 3289226 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.65 | 50.0 | 5.43e-01 | 83.3% | 94.8% |
| 4970323 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.65 | 52.0 | 5.43e-01 | 84.1% | 91.2% |
| 4629438 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.64 | 48.0 | 5.26e-01 | 89.9% | 98.2% |
| 3944186 | 230.5.1.1 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 | 0.63 | 49.0 | 4.92e-01 | 84.1% | 79.3% |
| 3278458 | 230.5.1.4 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 | 0.63 | 50.0 | 5.06e-01 | 84.1% | 89.3% |
| 5058702 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.62 | 49.0 | 5.05e-01 | 84.1% | 85.2% |
| 5035388 | 230.5.1.4 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 | 0.61 | 48.0 | 4.82e-01 | 83.3% | 83.6% |
| 3595900 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.58 | 46.0 | 3.63e-01 | 83.3% | 40.4% |
| 3599357 | 230.5.1.0 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain | 0.58 | 45.0 | 4.84e-01 | 82.6% | 100.0% |
| 3718698 | 230.5.1.2 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder | 0.58 | 46.0 | 3.57e-01 | 83.3% | 39.0% |
| 3531258 | 230.5.1.2 ↗ | a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › MVP_shoulder | 0.58 | 45.0 | 4.61e-01 | 82.6% | 91.9% |
| 3253204 | 230.6.1.1 ↗ | a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae | 0.58 | 46.0 | 4.56e-01 | 84.1% | 80.0% |
| 3282536 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 28.0 | 3.52e-01 | 90.6% | 78.8% |
| 3225532 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.55 | 33.0 | 3.50e-01 | 87.0% | 67.5% |
| 4938668 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.55 | 32.0 | 3.65e-01 | 86.2% | 76.2% |
| 4954905 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.54 | 32.0 | 3.58e-01 | 86.2% | 73.6% |
| 5041395 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.54 | 34.0 | 3.62e-01 | 86.2% | 72.5% |
| 4984573 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.53 | 34.0 | 3.77e-01 | 85.5% | 80.9% |
| 5066195 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.53 | 36.0 | 3.76e-01 | 87.7% | 76.0% |
| 1086995 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.52 | 21.0 | 3.22e-01 | 83.3% | 94.2% |
| 4995504 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.52 | 33.0 | 3.64e-01 | 87.0% | 76.5% |
| 4351609 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.50 | 37.0 | 3.35e-01 | 76.8% | 87.9% |