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PH2015_18_scaffold_2_prodigal-single.1__X__X__00292

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00292

Identity

Kingdom:
phage

Quality

73.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-57
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uv8A06 3.30.70.2490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.70 49.0 4.43e-01 83.0% 53.7%
4lq0A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.67 51.0 3.64e-01 85.1% 27.2%
1ev0A00 3.30.1070.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE 0.65 46.0 4.41e-01 78.7% 77.6%
1ug8A00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.65 49.0 4.20e-01 89.4% 55.2%
3tghA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.62 51.0 3.13e-01 95.7% 35.2%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 48.0 4.13e-01 100.0% 66.3%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 44.0 3.05e-01 83.0% 27.1%
7ahfA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 44.0 3.15e-01 83.0% 33.6%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 39.0 3.76e-01 70.2% 78.9%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.58 47.0 3.64e-01 97.9% 40.7%
2ganA02 6.20.300.10 Special › Other non-globular › CbiD-like › 0.58 38.0 4.02e-01 78.7% 84.6%
2lw7A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 43.0 3.45e-01 93.6% 59.6%
2dk5A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.73e-01 80.9% 71.2%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 44.0 3.88e-01 95.7% 58.9%
3bz6A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.86e-01 93.6% 73.1%
5flmA02 3.30.1360.140 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.55 43.0 3.34e-01 100.0% 48.5%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.08e-01 83.0% 38.1%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.13e-01 85.1% 37.8%
2w5fB01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 46.0 3.33e-01 100.0% 87.5%
3ey5A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.09e-01 93.6% 40.6%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 41.0 3.03e-01 83.0% 36.4%
1lmlA02 3.90.132.10 Alpha Beta › Alpha-Beta Complex › Leishmanolysin; domain 2 › Leishmanolysin , domain 2 0.55 39.0 3.01e-01 76.6% 39.5%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.24e-01 97.9% 54.5%
1kn6A00 3.30.70.850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8, pro-domain 0.54 41.0 3.85e-01 100.0% 89.0%
2nnnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.29e-01 95.7% 37.9%
2f4wB00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.54 43.0 3.07e-01 91.5% 30.9%
5hs7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.60e-01 95.7% 52.0%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 44.0 3.19e-01 95.7% 37.6%
1uwvA03 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 3.25e-01 97.9% 54.0%
3qi7A03 3.30.30.130 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.53 38.0 3.88e-01 85.1% 91.1%
2ja2A02 3.90.800.10 Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 0.53 39.0 3.05e-01 85.1% 76.7%
2rf4E02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 44.0 3.81e-01 100.0% 60.2%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.14e-01 95.7% 37.6%
2ediA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.53 41.0 3.04e-01 100.0% 33.1%
1fpqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.18e-01 95.7% 45.0%
2f69A02 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.52 42.0 3.11e-01 97.9% 57.3%
1ji6A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 41.0 2.99e-01 97.9% 88.9%
2x8fA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 45.0 2.72e-01 100.0% 14.8%
6ovbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 42.0 3.03e-01 97.9% 87.7%
3ieyA02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 38.0 3.25e-01 93.6% 51.0%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 38.0 3.04e-01 91.5% 68.0%
2fswA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 42.0 3.38e-01 95.7% 50.0%
2h2yA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.51 40.0 3.21e-01 97.9% 44.0%
2qpwA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.51 39.0 3.05e-01 93.6% 70.6%
4g6qA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.91e-01 70.2% 62.1%
4k15A00 2.60.40.3860 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 40.0 3.07e-01 100.0% 52.2%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.50 38.0 3.24e-01 97.9% 57.0%
1yrvA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 39.0 2.96e-01 100.0% 69.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4625711 570.1.1.1 alpha arrays › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › Pre-protein crosslinking domain of SecA › SecA_PP_bind 0.65 48.0 3.57e-01 80.9% 78.4%
3266580 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 38.0 2.43e-01 70.2% 11.3%
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.64 50.0 4.11e-01 95.7% 57.0%
3698196 320.1.1.1 a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H 0.63 47.0 3.92e-01 85.1% 45.6%
4651283 2008.1.1.80 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2 0.63 50.0 3.82e-01 93.6% 49.2%
3940690 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.60 39.0 3.10e-01 70.2% 29.5%
3521147 304.166.1.7 a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PTPRR_N 0.60 48.0 3.98e-01 100.0% 65.0%
3291803 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 42.0 3.44e-01 76.6% 50.5%
3510281 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.59 47.0 3.18e-01 95.7% 42.4%
3290673 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.59 43.0 3.21e-01 83.0% 35.6%
3929799 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 47.0 4.25e-01 100.0% 68.0%
3234354 3352.1.1.12 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Dpy19 0.58 44.0 2.55e-01 89.4% 27.0%
4108772 243.3.1.10 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YPEB_PepSY1-2 0.58 46.0 4.11e-01 95.7% 64.0%
4012100 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 45.0 3.28e-01 89.4% 35.7%
3295990 304.9.1.7 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › XS 0.57 46.0 3.35e-01 100.0% 68.1%
4016327 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.57 37.0 3.28e-01 72.3% 42.7%
3286426 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 44.0 3.97e-01 93.6% 60.0%
5054762 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.57 44.0 3.63e-01 95.7% 50.5%
3202491 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 44.0 3.71e-01 87.2% 61.2%
3486997 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.57 45.0 3.43e-01 100.0% 56.3%
3312483 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.57 42.0 3.19e-01 83.0% 40.8%
4648970 101.1.10.2 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N,Cyclin_C_2 0.56 45.0 2.81e-01 95.7% 28.9%
4651987 205.1.1.0 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin 0.55 45.0 3.43e-01 100.0% 80.0%
4464664 304.7.1.4 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › S8_pro-domain 0.55 43.0 3.79e-01 100.0% 77.6%
3958164 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 45.0 3.29e-01 100.0% 78.1%
3783520 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.55 44.0 3.99e-01 100.0% 72.0%
3276975 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.55 39.0 3.04e-01 85.1% 76.3%
3720928 298.3.1.1 a+b two layers › FwdE/GAPDH domain-like › Serine dehydratase beta chain-like › Serine dehydratase beta chain-like › SDH_beta 0.55 43.0 3.15e-01 95.7% 81.9%
3953803 323.1.1.8 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat 0.55 45.0 3.19e-01 100.0% 68.0%
4058778 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.54 46.0 2.82e-01 100.0% 86.9%
4236701 323.1.1.12 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › TRI-like_N 0.54 43.0 2.96e-01 100.0% 67.1%
3654518 101.1.2.288 alpha arrays › HTH › HTH › winged helix domain › Stk19 0.54 41.0 3.32e-01 93.6% 46.4%
4307642 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.54 39.0 3.29e-01 95.7% 40.0%
3311047 205.1.1.1 a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 0.53 43.0 3.88e-01 95.7% 67.1%
4025698 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 36.0 2.52e-01 74.5% 18.9%
4026674 11.21.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domain in tailspike protein › Ig-like domain in tailspike protein 0.53 41.0 3.47e-01 83.0% 76.2%
3721289 211.1.1.1 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.52 40.0 3.70e-01 100.0% 62.9%
3588306 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.52 43.0 3.16e-01 97.9% 37.9%
3846780 269.1.1.1 a+b complex topology › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen C-terminal domain-like › Fibrinogen_C 0.52 40.0 2.68e-01 93.6% 73.5%
3757443 223.1.1.71 a+b three layers › Profilin-like › sensor domains › sensor domains › VGCC_alpha2 0.52 39.0 2.43e-01 95.7% 61.9%
3177251 216.1.1.41 a+b two layers › UBC-like › UBC-like › UBC-like › PF29959 0.51 41.0 3.03e-01 100.0% 65.8%
4025053 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.51 38.0 3.18e-01 85.1% 66.3%
3968506 3859.1.1.0 alpha arrays › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain › uncharacterized protein BT_1490 C-terminal domain 0.51 38.0 3.14e-01 89.4% 41.0%
3474737 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 40.0 2.90e-01 93.6% 54.8%
3616844 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.51 41.0 3.12e-01 95.7% 56.8%
5051391 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 40.0 3.03e-01 95.7% 36.4%
3172522 109.20.1.1 alpha superhelices › Repetitive alpha hairpins › Coatomer subunit alpha C-terminal domain › Coatomer subunit alpha C-terminal domain › COPI_C 0.50 38.0 2.56e-01 93.6% 51.4%