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PH2015_18_scaffold_2_prodigal-single.1__X__X__00293
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00293
Identity
- Kingdom:
- phage
Quality
71.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-84
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.63 | 48.0 | 4.38e-01 | 100.0% | 62.0% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 44.0 | 4.45e-01 | 100.0% | 74.1% |
| 3zx7A02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.59 | 49.0 | 4.19e-01 | 90.4% | 97.1% |
| 5eo9A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 43.0 | 4.01e-01 | 100.0% | 61.7% |
| 1wu7A01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 44.0 | 3.22e-01 | 85.5% | 85.7% |
| 6ryvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 37.0 | 4.06e-01 | 100.0% | 84.6% |
| 5w1uA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 43.0 | 2.64e-01 | 85.5% | 24.6% |
| 4u9cA01 | 2.40.128.250 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 43.0 | 3.81e-01 | 89.2% | 91.9% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.53 | 47.0 | 3.76e-01 | 100.0% | 97.6% |
| 3w81A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 43.0 | 2.97e-01 | 96.4% | 97.2% |
| 1v4pA02 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.51 | 28.0 | 3.60e-01 | 98.8% | 95.7% |
| 2lojA01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.51 | 25.0 | 3.19e-01 | 95.2% | 92.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2487011 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 30.0 | 3.11e-01 | 89.2% | 47.4% |
| 1933331 | 2.1.1.78 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PCB_OB | 0.59 | 37.0 | 3.55e-01 | 90.4% | 53.7% |
| 4969590 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 48.0 | 4.84e-01 | 100.0% | 91.8% |
| 1162188 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 36.0 | 3.60e-01 | 100.0% | 63.2% |
| 3408928 | 3767.1.1.2 ↗ | a+b two layers › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Giardia Dicer N-terminal domain › Dicer_platform | 0.55 | 39.0 | 3.02e-01 | 74.7% | 58.9% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 46.0 | 3.86e-01 | 100.0% | 76.0% |
| 4030743 | 2003.1.1.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › 3HCDH_N | 0.51 | 41.0 | 3.20e-01 | 86.7% | 56.2% |
| 3236206 | 304.110.1.3 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Prp3_C | 0.50 | 41.0 | 3.41e-01 | 96.4% | 76.5% |