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PH2015_18_scaffold_2_prodigal-single.1__X__X__00295
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00295
Identity
- Kingdom:
- phage
Quality
95.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-70
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ldtA00 | 3.30.1330.60 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain | 0.68 | 48.0 | 3.74e-01 | 74.2% | 99.3% |
| 3hdoA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.67 | 48.0 | 3.83e-01 | 74.2% | 60.0% |
| 4huzA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 43.0 | 3.21e-01 | 71.2% | 29.5% |
| 5c68A00 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.63 | 40.0 | 3.39e-01 | 71.2% | 39.4% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.62 | 43.0 | 3.54e-01 | 72.7% | 41.3% |
| 4hs5A00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.62 | 43.0 | 3.77e-01 | 74.2% | 50.5% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 39.0 | 3.82e-01 | 71.2% | 59.5% |
| 5mu3B00 | 3.40.50.12050 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 43.0 | 3.32e-01 | 87.9% | 31.9% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.59 | 47.0 | 2.91e-01 | 89.4% | 47.7% |
| 4q05A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.59 | 46.0 | 3.02e-01 | 87.9% | 32.1% |
| 3nx3A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.59 | 42.0 | 3.31e-01 | 75.8% | 51.8% |
| 3oajA02 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.59 | 47.0 | 3.67e-01 | 87.9% | 93.1% |
| 2lydA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 40.0 | 3.19e-01 | 71.2% | 59.7% |
| 1u08A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 41.0 | 3.30e-01 | 77.3% | 62.7% |
| 4gp0B02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.57 | 42.0 | 3.43e-01 | 77.3% | 74.0% |
| 3dodB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 41.0 | 3.06e-01 | 75.8% | 49.4% |
| 2wb6A00 | 3.90.1150.90 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.56 | 40.0 | 3.47e-01 | 78.8% | 71.9% |
| 7lgjA01 | 3.40.1190.10 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain | 0.56 | 39.0 | 2.68e-01 | 72.7% | 29.0% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.55 | 40.0 | 3.43e-01 | 77.3% | 74.3% |
| 4zgfA00 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 43.0 | 3.44e-01 | 87.9% | 72.3% |
| 1y4oA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.55 | 39.0 | 3.45e-01 | 75.8% | 90.4% |
| 3dxvA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 40.0 | 3.17e-01 | 81.8% | 75.7% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 37.0 | 3.29e-01 | 71.2% | 81.8% |
| 4ddpA00 | 1.10.418.40 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Autophagy protein 6/Beclin 1 | 0.53 | 39.0 | 2.90e-01 | 81.8% | 53.8% |
| 3l44A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 38.0 | 2.83e-01 | 77.3% | 47.5% |
| 6mjjC01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.02e-01 | 71.2% | 94.7% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.04e-01 | 84.8% | 63.6% |
| 1zodA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 37.0 | 2.99e-01 | 75.8% | 61.0% |
| 2xcmC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 3.25e-01 | 71.2% | 87.0% |
| 5gaeG01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.52 | 36.0 | 3.37e-01 | 71.2% | 65.4% |
| 6h5bB01 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 38.0 | 3.18e-01 | 86.4% | 44.5% |
| 1wguA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 36.0 | 3.11e-01 | 75.8% | 56.5% |
| 2cjgA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.51 | 41.0 | 3.23e-01 | 92.4% | 85.1% |
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 40.0 | 3.72e-01 | 87.9% | 85.5% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.50 | 33.0 | 3.58e-01 | 71.2% | 86.3% |
| 4bv4R00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.50 | 40.0 | 2.52e-01 | 93.9% | 57.0% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5001118 | 2004.1.1.16 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Arf | 0.75 | 51.0 | 3.71e-01 | 71.2% | 27.9% |
| 5027607 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.74 | 48.0 | 4.65e-01 | 71.2% | 58.7% |
| 3450849 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.68 | 49.0 | 4.01e-01 | 75.8% | 93.3% |
| 4647064 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.68 | 43.0 | 4.52e-01 | 71.2% | 71.7% |
| 3437522 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.67 | 48.0 | 3.95e-01 | 77.3% | 94.4% |
| 3672734 | 1.1.1.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD | 0.67 | 47.0 | 3.93e-01 | 74.2% | 100.0% |
| 5072901 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.67 | 45.0 | 4.30e-01 | 71.2% | 60.0% |
| 3319016 | 2007.5.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase | 0.66 | 45.0 | 2.99e-01 | 71.2% | 19.2% |
| 3592929 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 51.0 | 3.31e-01 | 86.4% | 60.0% |
| 2841859 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 36.0 | 3.50e-01 | 72.7% | 50.0% |
| 3951704 | 103.12.1.0 ↗ | alpha arrays › RuvA-C › ANTAR domain › ANTAR domain | 0.62 | 36.0 | 3.61e-01 | 74.2% | 54.3% |
| 4928161 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.62 | 43.0 | 3.80e-01 | 77.3% | 48.0% |
| 223484 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.62 | 43.0 | 3.77e-01 | 74.2% | 50.5% |
| 4964255 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.62 | 52.0 | 3.74e-01 | 92.4% | 67.0% |
| 4011259 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.61 | 44.0 | 3.65e-01 | 77.3% | 50.0% |
| 3927846 | 109.4.1.1948 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Zw10_middle | 0.61 | 50.0 | 3.34e-01 | 89.4% | 67.2% |
| 3733997 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.60 | 44.0 | 3.63e-01 | 78.8% | 45.6% |
| 5002533 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.60 | 47.0 | 3.99e-01 | 86.4% | 52.4% |
| 4950190 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.60 | 52.0 | 4.20e-01 | 100.0% | 66.7% |
| 4975963 | 213.1.1.29 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_9 | 0.60 | 44.0 | 3.04e-01 | 80.3% | 32.5% |
| 4073557 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.60 | 44.0 | 3.89e-01 | 78.8% | 54.0% |
| 3965099 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.60 | 44.0 | 3.81e-01 | 78.8% | 51.4% |
| 3404671 | 6.1.1.1 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF | 0.60 | 43.0 | 3.37e-01 | 75.8% | 81.3% |
| 3659455 | 331.4.1.2 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF | 0.60 | 45.0 | 3.64e-01 | 81.8% | 53.8% |
| 4269649 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.60 | 45.0 | 3.88e-01 | 84.8% | 50.0% |
| 4218376 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.59 | 41.0 | 3.64e-01 | 74.2% | 53.0% |
| 4967706 | 220.1.1.76 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 | 0.59 | 50.0 | 4.02e-01 | 97.0% | 64.2% |
| 3410421 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.58 | 41.0 | 3.25e-01 | 74.2% | 66.4% |
| 3209881 | 109.4.1.207 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_2 | 0.58 | 41.0 | 2.44e-01 | 77.3% | 14.7% |
| 3970136 | 241.2.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like | 0.57 | 41.0 | 3.63e-01 | 78.8% | 50.5% |
| 4427813 | 241.2.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay | 0.57 | 41.0 | 3.61e-01 | 78.8% | 51.4% |
| 4943309 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.57 | 42.0 | 3.42e-01 | 92.4% | 44.7% |
| 4003797 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.57 | 45.0 | 3.77e-01 | 90.9% | 75.2% |
| 3281830 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.56 | 39.0 | 3.17e-01 | 74.2% | 92.6% |
| 4970074 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.56 | 45.0 | 3.37e-01 | 92.4% | 51.6% |
| 4980579 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.55 | 45.0 | 3.26e-01 | 92.4% | 54.1% |
| 3609766 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 46.0 | 3.02e-01 | 97.0% | 58.1% |
| 5003862 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 39.0 | 3.16e-01 | 75.8% | 88.6% |
| 3940247 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.55 | 46.0 | 3.78e-01 | 92.4% | 78.3% |
| 5028765 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.55 | 43.0 | 3.41e-01 | 89.4% | 49.3% |
| 5010640 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.73e-01 | 81.8% | 70.0% |
| 3786078 | 109.4.1.1764 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 | 0.54 | 45.0 | 2.77e-01 | 100.0% | 31.3% |
| 4097938 | 3016.1.1.2 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 | 0.54 | 37.0 | 3.26e-01 | 74.2% | 69.1% |
| 5048237 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.54 | 41.0 | 3.35e-01 | 92.4% | 44.4% |
| 5050910 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.24e-01 | 86.4% | 46.1% |
| 3659833 | 2007.5.1.17 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › PC-Esterase | 0.52 | 35.0 | 2.44e-01 | 71.2% | 18.4% |
| 4927204 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 36.0 | 3.31e-01 | 75.8% | 61.1% |
| 5052577 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 39.0 | 3.20e-01 | 86.4% | 46.2% |
| 3895743 | 3615.1.1.7 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › CD20 | 0.51 | 45.0 | 3.16e-01 | 95.5% | 37.9% |
| 5075957 | 2003.1.5.42 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 | 0.51 | 42.0 | 2.87e-01 | 93.9% | 97.6% |
D2
medium
residues 71-120
Domain cluster:
representative