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PH2015_18_scaffold_2_prodigal-single.1__X__X__00303
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00303
Identity
- Kingdom:
- phage
Quality
80.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-58
Domain cluster:
representative
CATH (45)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vx7301 | 1.10.287.310 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.89 | 68.0 | 6.00e-01 | 81.1% | 82.4% |
| 2xzmO02 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.85 | 65.0 | 5.85e-01 | 81.1% | 67.1% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.84 | 67.0 | 6.34e-01 | 84.9% | 79.0% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.83 | 67.0 | 6.22e-01 | 84.9% | 100.0% |
| 2paqA00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.83 | 71.0 | 4.80e-01 | 92.5% | 31.1% |
| 1z0pA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.82 | 71.0 | 6.27e-01 | 92.5% | 91.8% |
| 3qf7A02 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.81 | 67.0 | 6.31e-01 | 88.7% | 90.5% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 65.0 | 5.09e-01 | 88.7% | 64.2% |
| 1jalA03 | 1.10.150.300 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain | 0.79 | 62.0 | 5.35e-01 | 84.9% | 56.8% |
| 6h9xA01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.79 | 62.0 | 4.92e-01 | 84.9% | 64.7% |
| 1i4dA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 64.0 | 4.28e-01 | 88.7% | 44.1% |
| 2hjmA01 | 1.20.120.460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like | 0.78 | 68.0 | 5.77e-01 | 96.2% | 67.4% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 61.0 | 5.18e-01 | 84.9% | 65.5% |
| 2ca5A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 58.0 | 5.57e-01 | 83.0% | 80.6% |
| 3anwB00 | 1.20.58.2050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.77 | 61.0 | 4.27e-01 | 84.9% | 29.0% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.77 | 59.0 | 5.41e-01 | 84.9% | 90.1% |
| 6qs7C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 66.0 | 4.84e-01 | 92.5% | 62.9% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.76 | 54.0 | 5.15e-01 | 75.5% | 69.4% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.76 | 63.0 | 6.12e-01 | 90.6% | 91.5% |
| 7ymiZ01 | 1.10.287.740 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Photosystem II PsbZ, reaction centre | 0.75 | 59.0 | 5.74e-01 | 84.9% | 86.2% |
| 4abxA02 | 6.10.140.1090 | Special › Helix non-globular › Helix Hairpins › | 0.75 | 59.0 | 5.00e-01 | 86.8% | 56.3% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.75 | 59.0 | 5.21e-01 | 86.8% | 64.1% |
| 4b3fX01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 58.0 | 3.53e-01 | 84.9% | 21.5% |
| 1sxjB03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.74 | 60.0 | 4.96e-01 | 96.2% | 51.1% |
| 5kkrB02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.74 | 55.0 | 3.72e-01 | 79.2% | 93.9% |
| 1fouA01 | 1.10.246.30 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.73 | 53.0 | 4.76e-01 | 77.4% | 68.9% |
| 6xj1A01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.73 | 59.0 | 3.79e-01 | 88.7% | 20.4% |
| 3k6tB00 | 1.20.5.4010 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 53.0 | 5.55e-01 | 77.4% | 95.9% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.71 | 55.0 | 4.63e-01 | 88.7% | 49.5% |
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.66 | 57.0 | 4.43e-01 | 98.1% | 55.5% |
| 1sv0D00 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.66 | 48.0 | 4.20e-01 | 77.4% | 90.1% |
| 1vt0M02 | 1.10.1740.160 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.65 | 54.0 | 4.57e-01 | 94.3% | 54.4% |
| 2qkdA02 | 2.60.120.1040 | Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain | 0.65 | 55.0 | 4.14e-01 | 100.0% | 50.7% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 48.0 | 4.97e-01 | 86.8% | 100.0% |
| 1tj7A01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.64 | 54.0 | 4.36e-01 | 94.3% | 48.6% |
| 2odvA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 48.0 | 3.89e-01 | 86.8% | 48.2% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.63 | 47.0 | 3.12e-01 | 86.8% | 18.2% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 45.0 | 4.16e-01 | 81.1% | 63.5% |
| 1gjsA00 | 1.10.8.40 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain | 0.60 | 44.0 | 4.11e-01 | 77.4% | 66.2% |
| 4b94A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 43.0 | 3.36e-01 | 88.7% | 54.6% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.58 | 45.0 | 3.51e-01 | 94.3% | 63.0% |
| 1ursA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 40.0 | 2.86e-01 | 79.2% | 39.7% |
| 2d54A02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.55 | 44.0 | 3.53e-01 | 88.7% | 75.7% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 39.0 | 3.80e-01 | 77.4% | 91.7% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.54 | 44.0 | 3.42e-01 | 92.5% | 58.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734731 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.91 | 72.0 | 5.20e-01 | 84.9% | 33.3% |
| 3838856 | 187.1.1.1 ↗ | alpha arrays › alpha-helical ferredoxin-like › alpha-helical ferredoxin › alpha-helical ferredoxin › Fer4_8 | 0.86 | 68.0 | 5.39e-01 | 84.9% | 59.0% |
| 3410238 | 2004.1.1.417 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 | 0.85 | 71.0 | 3.94e-01 | 86.8% | 13.2% |
| 4507542 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.83 | 66.0 | 5.42e-01 | 84.9% | 52.2% |
| 3998272 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.82 | 60.0 | 5.06e-01 | 77.4% | 49.4% |
| 4877083 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.82 | 62.0 | 4.62e-01 | 83.0% | 33.3% |
| 3944240 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.79 | 65.0 | 5.39e-01 | 88.7% | 56.7% |
| 4315986 | 192.7.1.2 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N | 0.79 | 65.0 | 5.38e-01 | 88.7% | 56.7% |
| 3377481 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.78 | 61.0 | 5.90e-01 | 84.9% | 78.3% |
| 5076085 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.77 | 62.0 | 4.10e-01 | 88.7% | 47.1% |
| 3183420 | 604.6.1.4 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GGA_N-GAT | 0.76 | 62.0 | 6.12e-01 | 86.8% | 83.6% |
| 3520869 | 3746.1.1.0 ↗ | alpha bundles › Membrane-integrating protein Mistic › Membrane-integrating protein Mistic › Membrane-integrating protein Mistic | 0.75 | 57.0 | 5.06e-01 | 81.1% | 57.3% |
| 3939354 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.74 | 59.0 | 4.37e-01 | 90.6% | 37.9% |
| 3603682 | 2484.1.1.211 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605, Cas12f1-like_TNB | 0.71 | 56.0 | 3.68e-01 | 86.8% | 41.3% |
| 4947248 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 58.0 | 4.52e-01 | 92.5% | 99.1% |
| 3570117 | 375.6.1.2 ↗ | few secondary structure elements › Rubredoxin-like › FlhC-like › FlhC-like › PF31275 | 0.63 | 47.0 | 4.54e-01 | 81.1% | 75.0% |