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PH2015_18_scaffold_2_prodigal-single.1__X__X__00311

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00311

Identity

Kingdom:
phage

Quality

93.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-83
PDB
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1whvA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 42.0 3.98e-01 100.0% 53.0%
3ipjA01 3.30.1360.60 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Glucose permease domain IIB 0.65 40.0 4.10e-01 100.0% 62.5%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.64 42.0 3.83e-01 100.0% 50.0%
1u5tA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 39.0 4.11e-01 79.0% 66.7%
4i0wA00 3.30.70.2980 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 38.0 3.67e-01 100.0% 51.1%
3u1kB04 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.64 45.0 4.74e-01 100.0% 83.3%
2dgtA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 41.0 4.32e-01 100.0% 75.3%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.61 38.0 4.08e-01 100.0% 73.2%
4aimA03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 41.0 4.32e-01 100.0% 80.3%
2diuA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 42.0 4.37e-01 100.0% 80.8%
1b4bA00 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.59 40.0 4.20e-01 100.0% 78.9%
2hiyA02 3.30.70.1260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › bacterial protein sp0830 like 0.59 39.0 3.77e-01 100.0% 59.8%
1in0A01 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 39.0 4.11e-01 100.0% 80.0%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.57 40.0 4.24e-01 100.0% 85.7%
1weyA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 40.0 3.78e-01 100.0% 58.7%
2jugA01 1.10.10.1830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Non-ribosomal peptide synthase, adenylation domain 0.57 29.0 3.38e-01 74.1% 69.1%
2kyzA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 36.0 3.90e-01 100.0% 79.1%
1bqnA02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 39.0 3.76e-01 100.0% 63.8%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 44.0 3.80e-01 100.0% 55.0%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 34.0 3.39e-01 80.2% 60.2%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 31.0 3.46e-01 82.7% 70.3%
1earA02 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.54 32.0 3.45e-01 100.0% 68.1%
2gjhA00 3.30.1070.20 Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › 0.54 32.0 3.76e-01 88.9% 86.0%
2i8eA01 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.46e-01 100.0% 67.6%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.53 41.0 3.39e-01 100.0% 46.5%
6zbsA02 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.53 45.0 3.45e-01 100.0% 99.0%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.53 42.0 3.20e-01 88.9% 95.1%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 47.0 4.12e-01 100.0% 86.0%
1tbxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.62e-01 97.5% 67.8%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.52 40.0 4.09e-01 100.0% 84.8%
6u9hF02 3.30.70.1150 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 0.52 33.0 3.40e-01 100.0% 66.2%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.52e-01 98.8% 63.8%
3p3dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 38.0 3.79e-01 100.0% 73.6%
4bpe700 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 3.48e-01 97.5% 60.4%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 35.0 3.38e-01 97.5% 58.6%
3pcoB04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.52 36.0 3.76e-01 100.0% 80.0%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 39.0 3.67e-01 100.0% 65.0%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.59e-01 100.0% 70.6%
7uinD01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.51 44.0 3.58e-01 100.0% 58.7%
1ybtB00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 40.0 3.20e-01 100.0% 40.7%
3v10A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.22e-01 100.0% 44.5%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.39e-01 97.5% 62.4%
3f6oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 33.0 3.20e-01 90.1% 57.1%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 3.40e-01 100.0% 61.2%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.41e-01 98.8% 63.4%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 36.0 3.51e-01 97.5% 67.8%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.53e-01 97.5% 70.1%
2zkzC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 35.0 3.50e-01 98.8% 69.0%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 39.0 3.39e-01 100.0% 52.3%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.34e-01 100.0% 62.4%
1s12A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.50 36.0 3.54e-01 79.0% 93.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3420810 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 44.0 4.17e-01 100.0% 56.8%
5039768 3501.1.1.0 ↗ a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 0.65 43.0 4.53e-01 100.0% 74.7%
3301650 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 44.0 4.72e-01 100.0% 82.9%
3586847 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.64 44.0 4.51e-01 96.3% 73.8%
3966338 327.16.1.19 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › NRho 0.64 39.0 4.55e-01 98.8% 90.9%
3862939 327.11.2.53 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27824 0.64 39.0 3.83e-01 100.0% 55.6%
3895826 327.11.2.46 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_4 0.62 44.0 4.81e-01 100.0% 92.3%
3249286 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 42.0 4.34e-01 100.0% 76.0%
3311697 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.61 43.0 4.69e-01 100.0% 92.3%
3218171 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 43.0 4.47e-01 100.0% 80.0%
3659062 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.61 41.0 4.31e-01 100.0% 80.0%
4932335 101.1.9.20 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PhetRS_B1 0.60 43.0 4.54e-01 100.0% 87.1%
3717644 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.60 43.0 4.42e-01 100.0% 81.3%
5027716 101.1.9.5 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.59 42.0 4.32e-01 100.0% 80.0%
5077049 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.59 39.0 4.10e-01 100.0% 73.3%
3892181 304.8.1.85 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › KH_PARP14_4 0.59 43.0 4.57e-01 100.0% 90.0%
3564195 327.11.2.46 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_PARP14_4 0.59 43.0 4.68e-01 100.0% 96.9%
3743271 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 42.0 4.19e-01 100.0% 72.9%
3706636 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.58 33.0 3.36e-01 86.4% 56.2%
3885545 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 41.0 4.45e-01 100.0% 93.8%
4990677 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.57 39.0 3.92e-01 97.5% 69.4%
5031556 4955.1.1.0 ↗ a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.56 40.0 4.04e-01 100.0% 73.8%
4563340 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 35.0 3.74e-01 98.8% 72.9%
3987638 304.48.1.49 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_GdpP 0.55 43.0 3.52e-01 100.0% 46.0%
3225058 101.1.2.566 ↗ alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.54 36.0 2.46e-01 76.5% 16.9%
4975148 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.54 35.0 3.31e-01 100.0% 51.4%
4976190 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.54 34.0 3.66e-01 100.0% 78.5%
5015566 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 38.0 3.76e-01 98.8% 70.6%
4440212 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 36.0 3.39e-01 97.5% 53.2%
138578 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.53 37.0 3.58e-01 100.0% 62.5%
5012783 101.1.9.134 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF2067 0.53 34.0 3.65e-01 100.0% 80.0%
5016878 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 36.0 3.71e-01 98.8% 73.8%
3283051 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 36.0 3.38e-01 100.0% 54.5%
5060973 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.52 36.0 3.51e-01 97.5% 63.2%
4943421 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.52 33.0 3.57e-01 100.0% 80.0%
3920426 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.52 46.0 3.45e-01 100.0% 96.1%
3282143 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.52 36.0 3.49e-01 100.0% 63.2%
4434853 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.52 44.0 3.24e-01 100.0% 45.4%
3896924 320.4.1.5 ↗ a+b two layers › R3H domain-like › PUB domain › PUB domain › Gasdermin_C 0.51 45.0 3.41e-01 100.0% 95.1%
2389424 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 34.0 3.33e-01 97.5% 59.8%
3963899 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.51 35.0 3.53e-01 98.8% 70.6%
4932601 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 41.0 4.30e-01 100.0% 98.7%
5006816 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.50 36.0 3.66e-01 98.8% 77.5%
4826122 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 42.0 3.75e-01 100.0% 84.5%
4295057 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.50 40.0 2.80e-01 87.7% 42.2%
4241985 2006.1.1.37 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › S6PP+Hydrolase_3 0.50 40.0 2.79e-01 87.7% 42.2%
5082628 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.50 43.0 4.04e-01 100.0% 77.0%
3951867 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.50 35.0 3.29e-01 98.8% 56.0%
3279731 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.50 35.0 3.36e-01 100.0% 63.2%