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PH2015_18_scaffold_2_prodigal-single.1__X__X__00349

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00349

Identity

Kingdom:
phage

Quality

74.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 571-696
PDB
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.70 46.0 5.14e-01 99.2% 87.2%
2a73B06 2.60.40.690 Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-macroglobulin, receptor-binding domain 0.70 45.0 4.32e-01 100.0% 56.9%
3bgaA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.69 46.0 4.96e-01 81.7% 80.0%
3qdhA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 46.0 4.26e-01 100.0% 53.8%
1jz7A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 43.0 4.70e-01 81.7% 77.4%
3d30A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.67 37.0 4.21e-01 81.7% 71.3%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 46.0 4.77e-01 82.5% 76.5%
4hd5A01 2.60.40.3760 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 43.0 4.76e-01 82.5% 83.5%
2woyA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 51.0 4.77e-01 100.0% 65.2%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 39.0 4.53e-01 81.7% 83.9%
8begA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 52.0 4.78e-01 100.0% 65.6%
2ed8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 38.0 4.49e-01 78.6% 83.7%
4ofqA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 50.0 4.71e-01 100.0% 65.8%
1tdqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 42.0 4.80e-01 99.2% 91.1%
5axgA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 47.0 4.76e-01 100.0% 75.4%
7xc8A02 2.60.40.760 Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain 0.64 37.0 4.09e-01 81.0% 71.1%
3r8qA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 4.40e-01 100.0% 82.6%
3r8qA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 39.0 4.53e-01 99.2% 87.6%
6xaxA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 38.0 4.51e-01 81.0% 89.4%
1xzwA01 2.60.40.380 Mainly Beta › Sandwich › Immunoglobulin-like › Purple acid phosphatase-like, N-terminal 0.62 42.0 4.65e-01 99.2% 87.8%
2ee3A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 39.0 4.15e-01 84.1% 72.2%
6hyfA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 4.32e-01 100.0% 77.4%
5t89Y06 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 40.0 4.53e-01 79.4% 89.1%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.61 46.0 4.78e-01 99.2% 84.5%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.61 46.0 4.72e-01 99.2% 80.5%
5z0uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 4.50e-01 100.0% 76.6%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.61 45.0 4.95e-01 97.6% 98.0%
3wihA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 37.0 4.21e-01 100.0% 87.5%
3hqiA01 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.58 53.0 5.17e-01 100.0% 95.6%
8begA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 48.0 4.45e-01 100.0% 68.9%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 4.34e-01 99.2% 84.8%
5j11C02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 4.14e-01 99.2% 82.7%
2zx2A01 2.60.120.740 Mainly Beta › Sandwich › Jelly Rolls › Rhamnose-binding lectin domain (RBL) 0.58 41.0 4.62e-01 99.2% 96.9%
4ofqB01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 51.0 4.50e-01 100.0% 66.1%
3c9aA02 2.20.20.150 Mainly Beta › Single Sheet › Anthopleurin-A › 0.58 28.0 3.72e-01 100.0% 91.8%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 39.0 4.01e-01 92.1% 72.5%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 43.0 4.07e-01 81.0% 86.0%
1g87A02 2.60.40.710 Mainly Beta › Sandwich › Immunoglobulin-like › Endoglucanase-like 0.57 43.0 4.02e-01 100.0% 63.5%
1u07B00 3.30.2420.10 Alpha Beta › 2-Layer Sandwich › TolA/TonB C-terminal domain › TonB 0.56 28.0 3.32e-01 100.0% 67.0%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 4.52e-01 99.2% 91.1%
2n59A00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 38.0 4.10e-01 100.0% 85.1%
4gioA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 41.0 4.55e-01 96.8% 100.0%
3payC01 2.60.40.2100 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 39.0 3.55e-01 73.0% 82.8%
1ulvA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.55 43.0 3.38e-01 82.5% 73.2%
2nmsA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 41.0 4.31e-01 82.5% 86.6%
1g13A00 2.70.220.10 Mainly Beta › Distorted Sandwich › Ganglioside M2 Activator Protein; Chain: A, › Ganglioside GM2 activator 0.55 46.0 4.30e-01 92.9% 91.4%
4xurA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 42.0 3.93e-01 100.0% 65.2%
3o0lA00 2.60.40.3230 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 40.0 4.28e-01 84.9% 90.8%
2vdrB02 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.54 44.0 4.19e-01 90.5% 73.9%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 3.72e-01 100.0% 66.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 41.0 4.33e-01 99.2% 94.6%
1ihmB01 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.95e-01 100.0% 72.3%
3v0aB03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.04e-01 100.0% 92.2%
1pk6C00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.69e-01 99.2% 96.9%
4f3jA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 4.51e-01 100.0% 92.3%
1qfjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 34.0 3.86e-01 99.2% 93.4%
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 31.0 3.56e-01 80.2% 84.3%
1rocA00 2.60.40.1490 Mainly Beta › Sandwich › Immunoglobulin-like › Histone chaperone ASF1-like 0.51 46.0 4.33e-01 99.2% 98.1%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 38.0 4.05e-01 96.8% 90.8%
5j98B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.61e-01 100.0% 73.1%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4101842 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.69 45.0 4.81e-01 81.0% 75.5%
3368356 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.69 39.0 4.35e-01 81.7% 70.0%
3367984 11.1.1.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Expansin_C 0.68 39.0 4.28e-01 82.5% 67.6%
3590065 11.1.5.50 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › AgI_II_C2 0.67 47.0 4.47e-01 100.0% 60.7%
3255719 11.1.1.698 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TgrO1 0.67 42.0 4.79e-01 100.0% 86.7%
5055396 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 46.0 4.96e-01 100.0% 85.7%
4270390 11.1.5.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.66 51.0 4.61e-01 100.0% 60.6%
4946901 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 46.0 5.03e-01 99.2% 87.6%
5051788 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.65 38.0 4.15e-01 100.0% 68.6%
3248954 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 41.0 4.61e-01 99.2% 84.2%
4023131 11.1.1.14 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.64 39.0 4.61e-01 100.0% 89.4%
3943622 11.1.1.203 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LacZ_4 0.64 44.0 4.69e-01 84.1% 80.9%
3276481 11.1.1.914 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29344 0.64 38.0 4.10e-01 100.0% 70.9%
2673499 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 44.0 4.54e-01 100.0% 75.4%
3275234 11.1.4.127 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › DUF7035 0.63 43.0 4.59e-01 100.0% 80.0%
142425 11.1.1.58 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-APP,V-set 0.62 43.0 4.30e-01 99.2% 69.8%
1283663 11.1.5.42 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Antigen_C 0.62 47.0 4.37e-01 100.0% 64.1%
3891540 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.61 38.0 4.48e-01 100.0% 91.8%
4948087 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 5.01e-01 99.2% 84.6%
1002433 11.10.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Toxin_ToxA 0.61 46.0 4.94e-01 97.6% 96.1%
3766054 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 3.83e-01 98.4% 60.8%
3912011 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 37.0 4.31e-01 99.2% 89.4%
3406668 11.1.1.536 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1091 0.60 50.0 4.61e-01 89.7% 83.7%
3252189 11.1.1.914 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29344 0.60 37.0 4.09e-01 80.2% 77.0%
3563893 10.30.1.1 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain › Gal_Lectin 0.60 45.0 4.88e-01 100.0% 95.2%
3577879 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 38.0 4.42e-01 81.7% 90.0%
3853506 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.59 42.0 4.12e-01 100.0% 68.1%
3804750 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.59 53.0 4.98e-01 100.0% 90.3%
3309937 11.10.1.5 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 0.58 53.0 4.95e-01 100.0% 90.3%
3598842 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.58 46.0 4.34e-01 100.0% 70.0%
4067132 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 43.0 4.52e-01 90.5% 87.3%
3618173 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 4.71e-01 93.7% 84.6%
4952062 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 53.0 4.69e-01 100.0% 76.1%
3543598 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.57 36.0 4.03e-01 100.0% 83.2%
3897763 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 4.36e-01 81.0% 85.5%
3275748 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 40.0 4.48e-01 99.2% 97.9%
3908013 10.30.1.1 beta sandwiches › jelly-roll › Latrophilin 1 gal_lectin domain › Latrophilin 1 gal_lectin domain › Gal_Lectin 0.56 43.0 4.58e-01 100.0% 92.7%
3511268 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.56 39.0 4.25e-01 99.2% 89.0%
3541348 11.1.1.538 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CHRD 0.55 45.0 4.53e-01 90.5% 87.2%
3901930 11.1.3.4 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › CHRD 0.55 44.0 4.38e-01 91.3% 80.7%
2389026 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.54 38.0 4.23e-01 99.2% 92.9%
3904991 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 45.0 4.20e-01 90.5% 85.8%
3563417 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.52 40.0 3.92e-01 99.2% 72.9%
3770745 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.73e-01 99.2% 63.7%
3884093 10.41.1.0 beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain 0.52 38.0 4.17e-01 97.6% 96.0%
4539042 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.52 40.0 4.01e-01 99.2% 78.5%
3925467 11.1.1.573 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cep192_D5 0.52 45.0 3.97e-01 100.0% 62.9%
3573400 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.52 47.0 4.52e-01 100.0% 93.0%
3879619 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.51 46.0 4.34e-01 99.2% 84.7%
3768503 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.51 46.0 4.39e-01 100.0% 89.0%
3723009 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 45.0 4.30e-01 99.2% 84.1%
3904265 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.50 45.0 4.47e-01 100.0% 94.8%
3593942 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 45.0 4.28e-01 100.0% 84.0%
3185677 10.32.1.40 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › BetaGal_ABD2 0.50 44.0 3.85e-01 97.6% 64.3%
3920281 10.3.1.2 beta sandwiches › jelly-roll › TNF-like › TNF-like › C1q 0.50 45.0 4.38e-01 100.0% 92.1%