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PH2015_18_scaffold_2_prodigal-single.1__X__X__00422

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00422

Identity

Kingdom:
phage

Quality

95.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-13_85-199
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13419.13 best HAD_2 32.2 1.40e-07 81.0% 51.7%
PF00702.33 Hydrolase 29.9 9.90e-07 73.0% 45.6%
D2 high residues 15-83
PDB
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.84 76.0 7.63e-01 98.6% 100.0%
2hdoA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.83 71.0 7.35e-01 100.0% 100.0%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.82 71.0 7.25e-01 100.0% 98.5%
2ah5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.82 70.0 7.24e-01 100.0% 100.0%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.79 65.0 6.58e-01 91.3% 100.0%
3fm9A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.77 67.0 6.51e-01 100.0% 91.0%
4ex6A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.76 67.0 6.83e-01 98.6% 100.0%
3d6jA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.75 66.0 6.68e-01 98.6% 100.0%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.75 66.0 6.56e-01 100.0% 98.6%
3mc1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 65.0 6.67e-01 100.0% 100.0%
3kbbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.74 64.0 6.38e-01 97.1% 100.0%
3iruA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.73 62.0 5.99e-01 97.1% 98.7%
2hi0A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.70 60.0 5.57e-01 98.6% 100.0%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.63 47.0 3.91e-01 82.6% 96.2%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.63 54.0 5.13e-01 97.1% 93.8%
2m6uA00 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.61 41.0 3.96e-01 71.0% 91.5%
3mwmA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 4.46e-01 82.6% 97.3%
4irlB02 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.60 48.0 4.42e-01 98.6% 66.7%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.12e-01 98.6% 68.4%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.59 40.0 4.01e-01 81.2% 71.0%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.59 40.0 3.95e-01 72.5% 89.5%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.58 41.0 3.93e-01 75.4% 80.5%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 37.0 3.56e-01 100.0% 57.0%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 42.0 4.30e-01 81.2% 100.0%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.57 50.0 4.96e-01 100.0% 97.3%
3nbxX03 1.20.58.1510 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 36.0 3.18e-01 100.0% 42.6%
2wzfA03 1.20.120.990 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Glycosyltransferase family 88, C-terminal domain 0.57 49.0 4.12e-01 100.0% 55.6%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.55 41.0 3.68e-01 79.7% 73.7%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 38.0 3.44e-01 98.6% 50.5%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.55 43.0 3.96e-01 85.5% 72.5%
6ygiB01 1.10.4090.10 Mainly Alpha › Orthogonal Bundle › Hepatitis B viral capsid (hbcag) fold › Viral capsid, core domain supefamily, Hepatitis B virus 0.54 38.0 3.00e-01 72.5% 56.2%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.54 43.0 4.12e-01 97.1% 93.3%
2bbwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.21e-01 95.7% 80.5%
1xdzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 42.0 2.97e-01 88.4% 86.6%
3s0aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 38.0 3.29e-01 78.3% 49.6%
2k0nA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.53 40.0 3.80e-01 84.1% 78.8%
1ct9B02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 45.0 2.95e-01 97.1% 65.3%
2pmlX02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.51 41.0 3.03e-01 95.7% 42.6%
7craA02 1.20.58.1480 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 39.0 3.64e-01 88.4% 82.6%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056328 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.87 79.0 5.48e-01 100.0% 32.4%
3510665 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.85 78.0 5.35e-01 100.0% 31.4%
4940290 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.84 76.0 5.28e-01 100.0% 32.6%
143838 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.83 73.0 5.05e-01 100.0% 30.6%
4539173 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.83 70.0 4.81e-01 100.0% 28.6%
5057279 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.83 74.0 5.16e-01 100.0% 32.6%
4066059 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.82 71.0 4.92e-01 100.0% 30.2%
5070839 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.82 74.0 5.04e-01 100.0% 29.6%
5029022 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.82 72.0 4.83e-01 100.0% 26.2%
5079753 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.81 73.0 5.00e-01 100.0% 31.2%
4994844 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.80 70.0 4.85e-01 100.0% 30.5%
4959879 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.80 71.0 4.94e-01 100.0% 31.6%
3173411 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.80 71.0 4.90e-01 100.0% 33.2%
3395163 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.80 71.0 4.90e-01 100.0% 33.8%
None 0.79 69.0 4.81e-01 100.0% 33.8%
3967412 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.78 70.0 4.87e-01 100.0% 31.8%
4975320 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.78 72.0 4.92e-01 100.0% 31.8%
3997715 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.78 69.0 4.78e-01 100.0% 30.4%
3738868 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.77 68.0 4.67e-01 100.0% 32.1%
4133911 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.77 68.0 4.75e-01 100.0% 31.9%
3284489 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.77 68.0 4.78e-01 100.0% 31.4%
3298158 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.75 68.0 4.54e-01 100.0% 28.0%
3589846 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.75 68.0 4.69e-01 100.0% 31.4%
3312305 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.75 67.0 4.58e-01 100.0% 29.4%
2774099 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.75 68.0 4.68e-01 100.0% 31.8%
3414575 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.75 65.0 4.40e-01 100.0% 28.7%
3645932 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.74 66.0 4.54e-01 100.0% 31.3%
3667771 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.74 66.0 4.46e-01 100.0% 29.4%
137157 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.74 64.0 4.56e-01 100.0% 33.3%
3761160 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.74 63.0 4.41e-01 100.0% 29.1%
3647113 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.73 64.0 4.46e-01 100.0% 33.0%
3587875 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.73 64.0 4.55e-01 100.0% 33.5%
3661874 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.73 65.0 4.43e-01 100.0% 29.6%
None 0.73 64.0 4.44e-01 100.0% 31.0%
3455206 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.72 63.0 4.37e-01 100.0% 30.0%
3590358 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.71 62.0 4.33e-01 100.0% 31.7%
3448788 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.69 59.0 4.47e-01 100.0% 38.9%
1180303 632.19.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › RICH 0.63 44.0 4.20e-01 73.9% 87.8%
3347027 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.63 50.0 3.53e-01 87.0% 27.9%
3538234 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.62 41.0 3.44e-01 98.6% 40.9%
3973793 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 45.0 2.83e-01 81.2% 29.3%
3530260 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.60 40.0 3.46e-01 98.6% 43.5%
3848559 109.4.1.1216 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_KNTC1_1st 0.60 46.0 3.49e-01 87.0% 33.5%
3595205 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.60 42.0 2.97e-01 73.9% 34.1%
2577269 7103.1.1.1 alpha arrays › MJ1004, C-terminal domain › MJ1004, C-terminal domain › MJ1004, C-terminal domain › PF31224 0.59 51.0 4.74e-01 100.0% 77.0%
3224103 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 43.0 3.64e-01 79.7% 74.4%
3740778 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 43.0 4.26e-01 81.2% 97.3%
3524377 5059.1.1.0 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.57 42.0 2.85e-01 79.7% 94.9%
3649030 603.1.1.97 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.56 47.0 3.23e-01 95.7% 25.2%
4935665 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.56 39.0 3.71e-01 72.5% 98.8%
3342850 592.7.1.0 alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.55 45.0 4.40e-01 91.3% 88.0%
3230949 103.4.1.1 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX 0.55 40.0 3.91e-01 100.0% 70.7%
199236 545.1.2.1 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain › PfUIS3 0.55 41.0 3.68e-01 79.7% 73.7%
4031489 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.54 40.0 3.97e-01 100.0% 74.7%
4433169 110.1.1.11 alpha arrays › DEATH domain › DEATH domain › DEATH domain › HSR 0.54 44.0 3.89e-01 97.1% 60.9%
3947894 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.53 34.0 3.32e-01 100.0% 56.2%
3616671 604.1.1.155 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29142 0.53 35.0 3.17e-01 98.6% 49.5%
4024107 545.1.1.0 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27 0.52 43.0 3.35e-01 98.6% 99.4%
3664940 192.4.1.22 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 0.52 35.0 3.41e-01 100.0% 61.3%
3796999 605.4.1.0 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.52 35.0 3.19e-01 71.0% 72.0%
3335640 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 33.0 3.42e-01 97.1% 69.2%
4034224 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.51 39.0 3.80e-01 100.0% 74.7%
5028219 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 38.0 3.50e-01 79.7% 80.0%
4998043 633.29.1.13 alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 › DUF2096_N 0.51 41.0 3.69e-01 91.3% 100.0%
3310956 630.1.1.0 a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain 0.50 36.0 2.92e-01 78.3% 74.5%