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PH2015_18_scaffold_2_prodigal-single.1__X__X__00445
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00445
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-107
Domain cluster:
rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00139__D5-107
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qagA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.67 | 50.0 | 4.99e-01 | 90.9% | 77.0% |
| 1auwA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.64 | 56.0 | 4.34e-01 | 99.0% | 80.7% |
| 1bhdA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.64 | 50.0 | 4.87e-01 | 94.9% | 76.9% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 37.0 | 3.92e-01 | 91.9% | 70.6% |
| 2ve7C01 | 1.10.418.60 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Nuf2 subunit | 0.59 | 53.0 | 4.48e-01 | 100.0% | 79.3% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.58 | 41.0 | 3.74e-01 | 73.7% | 100.0% |
| 1p2xA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.57 | 49.0 | 4.24e-01 | 97.0% | 66.7% |
| 1w23A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.55 | 47.0 | 4.68e-01 | 98.0% | 90.3% |
| 3u1vA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 47.0 | 3.67e-01 | 97.0% | 62.3% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.53 | 39.0 | 3.85e-01 | 77.8% | 92.6% |
| 2hoxA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.53 | 47.0 | 3.74e-01 | 100.0% | 100.0% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.52 | 38.0 | 3.36e-01 | 99.0% | 51.3% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.51 | 38.0 | 3.71e-01 | 78.8% | 87.5% |
| 3e9lA02 | 1.20.80.40 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region | 0.51 | 40.0 | 4.12e-01 | 93.9% | 89.5% |
| 3ucaA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 43.0 | 3.27e-01 | 100.0% | 56.9% |
| 4j5tA02 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.50 | 39.0 | 2.55e-01 | 84.8% | 49.8% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3184919 | 620.1.1.6 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB_2 | 0.72 | 49.0 | 3.98e-01 | 70.7% | 95.1% |
| 1843009 | 3783.1.1.1 ↗ | alpha bundles › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › Toxin RnlA C-terminal domain › RnlA-toxin_DBD | 0.61 | 51.0 | 4.32e-01 | 94.9% | 87.8% |
| 3516926 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.59 | 40.0 | 3.00e-01 | 77.8% | 29.6% |
| 5013251 | 3291.1.1.195 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › H-kinase_dim | 0.59 | 35.0 | 3.10e-01 | 98.0% | 39.9% |
| 3637886 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 40.0 | 3.29e-01 | 76.8% | 63.9% |
D2
high
residues 112-289
Domain cluster:
rep: IMGVR_UViG_3300035145_002450-3300035145-Ga0373595_0009153_3868_5049__D175-392
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x9zA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.63 | 39.0 | 4.29e-01 | 100.0% | 73.8% |
| 3hr6A02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 41.0 | 4.40e-01 | 100.0% | 76.4% |
| 4uzgA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 44.0 | 4.68e-01 | 100.0% | 86.5% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.59 | 32.0 | 3.56e-01 | 74.2% | 65.0% |
| 2woyA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 44.0 | 4.69e-01 | 99.4% | 88.6% |
| 8begA01 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 41.0 | 4.31e-01 | 100.0% | 81.4% |
| 1ihmB01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 42.0 | 3.93e-01 | 100.0% | 63.2% |
| 1tyjA00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 41.0 | 4.18e-01 | 100.0% | 79.4% |
| 1sq4A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 28.0 | 3.23e-01 | 88.2% | 65.9% |
| 3blcA00 | 2.70.98.90 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.55 | 43.0 | 3.74e-01 | 83.7% | 75.4% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 42.0 | 4.33e-01 | 93.8% | 85.1% |
| 5xrkA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 4.41e-01 | 97.2% | 95.0% |
| 3kd4A03 | 2.60.120.1130 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 36.0 | 4.06e-01 | 87.6% | 88.3% |
| 2lnjA00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.52 | 33.0 | 3.43e-01 | 74.2% | 65.9% |
| 5hbaA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 37.0 | 4.15e-01 | 91.6% | 97.7% |
| 2d4rA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 39.0 | 4.28e-01 | 79.8% | 100.0% |
| 2m89A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.51 | 36.0 | 4.15e-01 | 86.5% | 97.8% |
| 1pzdA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.50 | 32.0 | 3.93e-01 | 92.7% | 100.0% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4025374 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.70 | 41.0 | 4.75e-01 | 97.2% | 80.0% |
| 3924067 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.68 | 38.0 | 4.49e-01 | 100.0% | 77.6% |
| 3477921 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.68 | 53.0 | 5.62e-01 | 100.0% | 91.6% |
| 4026938 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.67 | 43.0 | 5.04e-01 | 99.4% | 91.2% |
| 5059640 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.67 | 41.0 | 4.66e-01 | 100.0% | 80.8% |
| 3884062 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.66 | 42.0 | 3.69e-01 | 100.0% | 43.8% |
| 3904321 | 11.1.5.95 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd | 0.65 | 38.0 | 4.22e-01 | 100.0% | 70.3% |
| 3532721 | 11.1.5.95 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd | 0.65 | 40.0 | 4.35e-01 | 100.0% | 72.0% |
| 3868241 | 11.1.5.95 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd | 0.64 | 39.0 | 4.26e-01 | 100.0% | 73.1% |
| 1236190 | 11.1.5.45 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › GramPos_pilinBB | 0.64 | 41.0 | 4.35e-01 | 100.0% | 72.1% |
| 4002435 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 41.0 | 4.23e-01 | 100.0% | 68.5% |
| 3701894 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 37.0 | 4.39e-01 | 85.4% | 84.0% |
| 3909881 | 11.1.5.95 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › TMEM132_3rd | 0.62 | 37.0 | 4.11e-01 | 100.0% | 72.4% |
| 1168392 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.62 | 41.0 | 4.34e-01 | 100.0% | 74.1% |
| 1554319 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.61 | 44.0 | 4.73e-01 | 100.0% | 84.1% |
| 4942975 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.60 | 39.0 | 4.74e-01 | 86.5% | 100.0% |
| 3509961 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.59 | 40.0 | 4.31e-01 | 86.0% | 78.7% |
| 1286181 | 881.1.1.7 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3805 | 0.59 | 32.0 | 3.60e-01 | 74.2% | 66.9% |
| 5041131 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.59 | 38.0 | 4.48e-01 | 99.4% | 92.8% |
| 4367518 | 12.3.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich | 0.58 | 47.0 | 4.05e-01 | 83.7% | 81.5% |
| 4197086 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.58 | 47.0 | 3.89e-01 | 83.7% | 68.9% |
| 5010847 | 10.2.1.72 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PNGaseA | 0.58 | 40.0 | 4.67e-01 | 92.7% | 100.0% |
| 3520168 | 10.1.1.10 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM | 0.58 | 42.0 | 4.06e-01 | 100.0% | 66.7% |
| 3993514 | 10.32.1.6 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein | 0.58 | 40.0 | 4.14e-01 | 100.0% | 75.2% |
| 5021820 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 51.0 | 4.73e-01 | 93.8% | 77.7% |
| 5083968 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.58 | 40.0 | 4.65e-01 | 85.4% | 100.0% |
| 4945167 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 39.0 | 4.64e-01 | 92.7% | 99.2% |
| 4009866 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.57 | 42.0 | 4.38e-01 | 100.0% | 83.1% |
| 3734451 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.57 | 33.0 | 3.49e-01 | 91.6% | 63.7% |
| 3961987 | 881.1.1.8 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C | 0.57 | 38.0 | 3.72e-01 | 74.2% | 62.1% |
| 5055324 | 4182.1.1.0 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like | 0.56 | 38.0 | 4.17e-01 | 97.2% | 84.1% |
| 1111986 | 10.32.1.84 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF6947 | 0.56 | 43.0 | 4.75e-01 | 94.4% | 98.6% |
| 3972141 | 881.1.1.25 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 | 0.56 | 37.0 | 3.98e-01 | 73.6% | 76.8% |
| 3922372 | 10.32.1.3 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Calpain_III | 0.55 | 43.0 | 4.67e-01 | 100.0% | 96.7% |
| 3964085 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.55 | 30.0 | 3.50e-01 | 73.0% | 73.1% |
| 4968966 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 37.0 | 4.35e-01 | 88.8% | 100.0% |
| 3819837 | 11.2.1.42 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF7651 | 0.54 | 38.0 | 3.66e-01 | 71.9% | 97.1% |
| 5030147 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.53 | 31.0 | 3.47e-01 | 73.6% | 70.3% |
| 4968383 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 39.0 | 4.36e-01 | 98.3% | 97.1% |
| 4392904 | 12.3.1.24 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas | 0.53 | 42.0 | 3.65e-01 | 83.7% | 76.1% |
| 3691232 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 31.0 | 3.39e-01 | 91.6% | 68.7% |
| 5067810 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.52 | 35.0 | 4.07e-01 | 90.4% | 94.6% |
| 4486297 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 28.0 | 2.97e-01 | 91.0% | 57.5% |
| 3736617 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.51 | 45.0 | 3.95e-01 | 100.0% | 65.8% |
| 4430745 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.50 | 33.0 | 3.67e-01 | 91.6% | 82.9% |
| 3973908 | 881.1.1.25 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF4946 | 0.50 | 33.0 | 3.56e-01 | 74.2% | 76.1% |
| 5038407 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 40.0 | 4.32e-01 | 88.2% | 99.3% |
| 3178618 | 12.3.1.45 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2264_C | 0.50 | 39.0 | 3.30e-01 | 82.0% | 91.6% |