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PH2015_18_scaffold_2_prodigal-single.1__X__X__00453

Bact-Vir

PH2015_18_scaffold_2_prodigal-single.1__X__X__00453

Identity

Kingdom:
phage

Quality

90.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 49-207
PDB
Domain cluster: rep: NC_048757.1__YP_009844891.1__HWC13_gp082__00082__D5-149
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00959.25 best Phage_lysozyme 30.0 8.10e-07 77.4% 73.6%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.84 75.0 7.75e-01 98.7% 98.6%
2anvA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.83 73.0 7.60e-01 96.9% 99.3%
3hdeC00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.82 72.0 7.20e-01 96.2% 89.0%
8b2sA01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.79 70.0 7.11e-01 93.7% 94.8%
8hp8A01 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.78 66.0 6.75e-01 93.7% 91.5%
4aqnA02 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.74 67.0 6.23e-01 95.6% 95.3%
4c5fA02 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.64 57.0 5.64e-01 95.6% 90.5%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.63 55.0 5.26e-01 94.3% 82.0%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 27.0 3.53e-01 80.5% 75.0%
1pduA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.53 39.0 3.47e-01 76.7% 93.0%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 31.0 3.50e-01 100.0% 77.2%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.50 31.0 3.72e-01 99.4% 94.2%
3gyuA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 37.0 3.24e-01 76.1% 79.3%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2488339 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.84 75.0 7.75e-01 98.7% 98.6%
3944610 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.83 71.0 7.13e-01 96.9% 88.7%
159686 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.83 73.0 7.60e-01 96.9% 99.3%
4834320 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.83 54.0 6.55e-01 84.3% 98.1%
136932 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.82 73.0 7.25e-01 96.2% 89.1%
4019669 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.81 74.0 7.48e-01 97.5% 97.4%
2771202 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.79 72.0 7.25e-01 100.0% 95.6%
3033455 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.79 69.0 6.89e-01 98.7% 90.7%
3949298 235.1.1.6 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme 0.78 71.0 6.84e-01 95.6% 86.9%
3377613 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.57 29.0 3.35e-01 88.1% 66.4%