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PH2015_18_scaffold_2_prodigal-single.1__X__X__00455
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00455
Identity
- Kingdom:
- phage
Quality
68.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1039-1104
D2
medium
residues 4-167
Domain cluster:
rep: OR032571.1__WJZ48267.1__X__00077__D150-291
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bkhA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.82 | 62.0 | 5.94e-01 | 76.8% | 86.3% |
| 3w6bB00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.78 | 58.0 | 5.99e-01 | 92.1% | 81.7% |
| 1xsfA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.77 | 40.0 | 4.85e-01 | 91.5% | 75.9% |
| 4c5fA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.76 | 58.0 | 5.74e-01 | 78.0% | 91.7% |
| 4yibA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.73 | 62.0 | 6.35e-01 | 94.5% | 91.1% |
| 1qsaA03 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.72 | 64.0 | 6.32e-01 | 95.1% | 87.9% |
| 6cfcA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.71 | 63.0 | 6.36e-01 | 95.7% | 93.8% |
| 1s7aA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 26.0 | 3.20e-01 | 89.0% | 69.9% |
| 4xxiA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.53 | 34.0 | 3.61e-01 | 93.9% | 70.7% |
| 6m4eA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 39.0 | 2.80e-01 | 80.5% | 58.1% |
| 1urvA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 37.0 | 3.84e-01 | 93.9% | 79.9% |
| 1ub9A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 25.0 | 3.10e-01 | 93.3% | 74.0% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 35.0 | 3.71e-01 | 93.9% | 80.1% |
| 2d2mD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.50 | 34.0 | 3.55e-01 | 93.3% | 75.9% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4031083 | 235.1.1.14 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Transglycosylas | 0.90 | 42.0 | 6.22e-01 | 70.1% | 95.0% |
| 1175858 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.82 | 62.0 | 5.85e-01 | 76.8% | 83.1% |
| 3254511 | 235.1.1.1 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Lys | 0.81 | 43.0 | 5.32e-01 | 78.0% | 81.0% |
| 3657952 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.78 | 55.0 | 5.13e-01 | 78.0% | 59.0% |
| 3839391 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.77 | 56.0 | 5.84e-01 | 78.7% | 79.4% |
| 4515466 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.76 | 58.0 | 5.62e-01 | 78.0% | 85.6% |
| 3166094 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.76 | 58.0 | 5.69e-01 | 78.0% | 88.0% |
| 4530587 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.76 | 56.0 | 5.34e-01 | 75.6% | 81.1% |
| 3222819 | 235.1.1.12 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Destabilase | 0.74 | 54.0 | 6.10e-01 | 91.5% | 95.3% |
| 3965879 | 235.1.1.32 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT, PF27553 | 0.73 | 63.0 | 6.34e-01 | 94.5% | 89.1% |
D3
medium
residues 168-194_570-615_871-977
Domain cluster:
rep: PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00373__D379-408_585-714
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1k28D03 | 2.40.30.150 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 | 0.76 | 41.0 | 5.57e-01 | 83.3% | 98.9% |
| 1wruA01 | 2.30.300.10 | Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold | 0.76 | 37.0 | 3.78e-01 | 81.7% | 48.0% |
| 4p02A03 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.72 | 34.0 | 4.10e-01 | 86.1% | 66.4% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 26.0 | 3.72e-01 | 74.4% | 82.6% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 25.0 | 3.63e-01 | 73.9% | 84.1% |
| 4ci2B02 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.58 | 36.0 | 4.27e-01 | 91.1% | 88.0% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.58 | 28.0 | 3.53e-01 | 82.8% | 75.2% |
| 2x8kA01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.58 | 32.0 | 4.09e-01 | 84.4% | 92.4% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 24.0 | 3.52e-01 | 73.9% | 94.5% |
| 4f07E00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 34.0 | 3.76e-01 | 88.3% | 74.5% |
| 3tm4A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 23.0 | 2.41e-01 | 77.8% | 40.0% |
| 1rz1A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 34.0 | 3.69e-01 | 88.3% | 74.3% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 34.0 | 3.45e-01 | 88.3% | 64.2% |
| 8ct0B01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 34.0 | 3.61e-01 | 88.3% | 70.5% |
| 3pftA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.52 | 34.0 | 3.61e-01 | 88.9% | 74.4% |
| 3f62A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 25.0 | 3.17e-01 | 76.7% | 75.9% |
| 1uscA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 34.0 | 3.46e-01 | 89.4% | 66.9% |
| 4f0qD01 | 2.30.280.20 | Mainly Beta › Roll › PUA domain-like › | 0.51 | 45.0 | 4.05e-01 | 96.1% | 78.8% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5002662 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.75 | 36.0 | 4.89e-01 | 80.6% | 85.0% |
| 3936663 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 42.0 | 4.98e-01 | 85.6% | 80.0% |
| 3968097 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.72 | 33.0 | 4.25e-01 | 80.0% | 71.8% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 37.0 | 4.47e-01 | 90.0% | 72.8% |
| 4031285 | 1.1.13.64 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › TT1_Tal | 0.70 | 34.0 | 4.78e-01 | 83.9% | 94.4% |
| 3970830 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.70 | 36.0 | 4.80e-01 | 81.7% | 90.0% |
| 3166182 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.69 | 30.0 | 4.17e-01 | 85.6% | 80.0% |
| 1914511 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.69 | 34.0 | 4.02e-01 | 88.9% | 66.1% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.68 | 32.0 | 3.92e-01 | 85.0% | 66.7% |
| 4936008 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.68 | 31.0 | 4.18e-01 | 87.2% | 81.1% |
| 3059162 | 1.1.13.30 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › E217_GP41 | 0.66 | 40.0 | 4.80e-01 | 84.4% | 88.7% |
| 4094235 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.65 | 33.0 | 3.88e-01 | 85.6% | 68.0% |
| 2475124 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.65 | 34.0 | 4.58e-01 | 81.7% | 95.7% |
| 4883825 | 1.1.13.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 | 0.64 | 33.0 | 4.58e-01 | 90.6% | 98.9% |
| 4444321 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.62 | 37.0 | 3.51e-01 | 90.6% | 49.8% |
| 4379249 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.62 | 32.0 | 3.81e-01 | 85.0% | 71.2% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 37.0 | 4.34e-01 | 85.0% | 84.0% |
| 4174934 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.60 | 28.0 | 4.01e-01 | 79.4% | 95.2% |
| 3981654 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.59 | 36.0 | 4.56e-01 | 86.1% | 100.0% |
| 4109849 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.59 | 29.0 | 4.13e-01 | 98.3% | 100.0% |
| 3941539 | 1.1.13.40 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail | 0.59 | 35.0 | 4.45e-01 | 80.6% | 100.0% |
| 4538400 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.59 | 32.0 | 3.64e-01 | 88.9% | 70.0% |
| 3607364 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 21.0 | 2.66e-01 | 76.7% | 52.2% |
| 2877144 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 36.0 | 3.04e-01 | 91.1% | 37.2% |
| 1320672 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.58 | 36.0 | 3.17e-01 | 91.1% | 42.6% |
| 4605381 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.57 | 29.0 | 3.96e-01 | 98.3% | 100.0% |
| 4493150 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 30.0 | 2.83e-01 | 84.4% | 40.0% |
| 4413783 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 36.0 | 3.21e-01 | 90.6% | 47.5% |
| 5017997 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.56 | 36.0 | 2.58e-01 | 90.0% | 24.0% |
| 4513657 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 35.0 | 3.34e-01 | 88.9% | 54.3% |
| 3542585 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.56 | 37.0 | 3.30e-01 | 90.6% | 48.8% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.55 | 39.0 | 4.08e-01 | 88.9% | 77.4% |
| 4458331 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 34.0 | 3.14e-01 | 90.0% | 48.1% |
| 4171744 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.55 | 34.0 | 3.09e-01 | 87.8% | 47.2% |
| 4154078 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.54 | 34.0 | 3.24e-01 | 91.1% | 53.0% |
| 4057590 | 1.1.5.86 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN3 | 0.53 | 36.0 | 4.07e-01 | 97.8% | 87.9% |
| 3451490 | 1.1.9.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA | 0.53 | 41.0 | 3.88e-01 | 94.4% | 67.0% |
| None | — | 0.51 | 33.0 | 2.35e-01 | 88.3% | 22.2% | |
| 4539244 | 1.1.5.26 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN | 0.51 | 29.0 | 3.69e-01 | 95.6% | 95.2% |
| 4482805 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.51 | 36.0 | 3.51e-01 | 90.6% | 65.6% |
| 4358643 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.50 | 32.0 | 3.05e-01 | 90.0% | 52.3% |
D4
medium
residues 195-364
Domain cluster:
rep: OQ326496.2__WDQ45522.1__X__00066__D7-128
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3d2lA02 | 2.20.25.110 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases | 0.70 | 20.0 | 3.32e-01 | 94.1% | 66.7% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.66 | 49.0 | 5.19e-01 | 95.9% | 86.6% |
| 4fe9A01 | 2.60.40.3640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 35.0 | 4.03e-01 | 89.4% | 71.7% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 32.0 | 4.00e-01 | 97.1% | 79.6% |
| 2hgsA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.61 | 33.0 | 4.05e-01 | 97.1% | 81.1% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.60 | 34.0 | 3.91e-01 | 100.0% | 73.4% |
| 3fdwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 33.0 | 3.76e-01 | 100.0% | 72.3% |
| 1uurA02 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.56 | 31.0 | 3.49e-01 | 90.6% | 69.5% |
| 1qhoA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 30.0 | 3.65e-01 | 100.0% | 83.3% |
| 2uvaG09 | 2.40.128.700 | Mainly Beta › Beta Barrel › Lipocalin › | 0.53 | 27.0 | 3.19e-01 | 98.2% | 69.0% |
| 6vg1A04 | 2.60.40.60 | Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins | 0.52 | 24.0 | 3.02e-01 | 100.0% | 69.2% |
| 6fhvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 28.0 | 3.53e-01 | 96.5% | 90.8% |
| 7alkA01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.95e-01 | 99.4% | 82.5% |
| 4wiqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 31.0 | 3.82e-01 | 91.2% | 97.2% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709246 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.73 | 30.0 | 4.85e-01 | 84.1% | 100.0% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 48.0 | 4.08e-01 | 95.3% | 47.4% |
| 4954552 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.65 | 51.0 | 5.27e-01 | 98.8% | 86.3% |
| 3904756 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.64 | 39.0 | 4.29e-01 | 88.8% | 74.3% |
| 3938599 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.63 | 32.0 | 2.77e-01 | 89.4% | 32.4% |
| 4873215 | 1.1.13.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 | 0.62 | 46.0 | 5.02e-01 | 99.4% | 92.1% |
| 4150613 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 28.0 | 3.48e-01 | 88.8% | 67.3% |
| 3901218 | 243.3.1.1 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin | 0.57 | 28.0 | 3.27e-01 | 95.9% | 61.6% |
| 3702373 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 31.0 | 4.19e-01 | 87.1% | 100.0% |
| 3887429 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 37.0 | 4.01e-01 | 89.4% | 80.7% |
| 3242186 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.54 | 32.0 | 3.68e-01 | 94.7% | 80.0% |
| 3475387 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.95e-01 | 90.6% | 75.0% |
| 3570123 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.53 | 40.0 | 4.47e-01 | 88.8% | 97.8% |
| 5061306 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 29.0 | 3.44e-01 | 87.1% | 77.4% |
| 3881458 | 11.1.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig | 0.52 | 37.0 | 4.26e-01 | 89.4% | 96.9% |
| 3202618 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 34.0 | 3.87e-01 | 98.8% | 86.9% |
| 3530521 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 30.0 | 3.86e-01 | 88.8% | 99.0% |
| 3523092 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 35.0 | 3.88e-01 | 91.8% | 88.5% |
| 3636521 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 34.0 | 3.74e-01 | 98.8% | 81.4% |
| 4959666 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 34.0 | 3.58e-01 | 98.2% | 73.5% |
| 3536237 | 11.1.1.852 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28276 | 0.50 | 38.0 | 4.21e-01 | 89.4% | 97.8% |
| 3480027 | 11.2.1.6 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › MNNL | 0.50 | 41.0 | 4.06e-01 | 100.0% | 82.3% |
| 4064677 | 7504.1.1.1 ↗ | a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Ham1p_like | 0.50 | 40.0 | 3.77e-01 | 99.4% | 69.8% |
D5
medium
residues 365-442_463-569
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787852 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.55 | 31.0 | 3.70e-01 | 82.2% | 81.7% |
| 3782877 | 3121.1.1.0 ↗ | a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain | 0.53 | 29.0 | 3.78e-01 | 80.5% | 97.0% |
D6
medium
residues 616-645_739-780
D7
medium
residues 646-738
Domain cluster:
representative
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4g6dB02 | 6.10.140.1800 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 55.0 | 5.83e-01 | 100.0% | 82.7% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 60.0 | 4.75e-01 | 92.5% | 65.4% |
| 4nxiA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.70 | 50.0 | 3.90e-01 | 79.6% | 35.2% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.70 | 54.0 | 5.75e-01 | 82.8% | 100.0% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.68 | 31.0 | 3.65e-01 | 97.8% | 61.9% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.65 | 57.0 | 5.42e-01 | 100.0% | 81.2% |
| 4oydB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.65 | 47.0 | 4.35e-01 | 100.0% | 59.8% |
| 7jveC01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 54.0 | 4.04e-01 | 93.5% | 69.0% |
| 4e40A00 | 1.20.1260.80 | Mainly Alpha › Up-down Bundle › Ferritin › | 0.64 | 56.0 | 4.12e-01 | 100.0% | 36.7% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.63 | 47.0 | 3.99e-01 | 79.6% | 54.2% |
| 3m7gA02 | 1.10.8.1010 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.63 | 47.0 | 4.71e-01 | 79.6% | 100.0% |
| 1a7mA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 51.0 | 4.24e-01 | 93.5% | 59.4% |
| 4ihuA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.62 | 47.0 | 3.72e-01 | 81.7% | 38.8% |
| 1szhA02 | 1.10.150.370 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Caenorhabditis elegans Her-1, C-terminal domain | 0.62 | 43.0 | 4.50e-01 | 82.8% | 81.7% |
| 4gr2A00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.62 | 49.0 | 4.71e-01 | 97.8% | 73.6% |
| 1qdbA02 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 46.0 | 4.04e-01 | 80.6% | 66.4% |
| 2wb7A03 | 1.20.120.870 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain | 0.61 | 46.0 | 4.13e-01 | 81.7% | 74.3% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.61 | 40.0 | 3.60e-01 | 100.0% | 47.0% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 53.0 | 4.82e-01 | 96.8% | 71.5% |
| 3dtoA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.61 | 46.0 | 4.73e-01 | 80.6% | 87.5% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.60 | 42.0 | 4.58e-01 | 100.0% | 87.0% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.60 | 42.0 | 3.70e-01 | 73.1% | 78.5% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.60 | 52.0 | 4.90e-01 | 97.8% | 92.1% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.59 | 53.0 | 4.55e-01 | 98.9% | 80.3% |
| 4cqiA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 45.0 | 4.25e-01 | 100.0% | 68.2% |
| 3caxA01 | 1.20.120.520 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like | 0.59 | 48.0 | 3.72e-01 | 90.3% | 61.3% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.59 | 53.0 | 4.98e-01 | 100.0% | 95.5% |
| 4oe8C00 | 1.10.8.1170 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.59 | 41.0 | 4.22e-01 | 72.0% | 90.8% |
| 4egwA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.57 | 44.0 | 4.02e-01 | 80.6% | 95.8% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.57 | 42.0 | 3.88e-01 | 78.5% | 79.0% |
| 3ls1A00 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.56 | 40.0 | 3.65e-01 | 77.4% | 62.4% |
| 1zylA03 | 1.20.1270.170 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.54 | 38.0 | 3.68e-01 | 75.3% | 66.0% |
| 3f7cA00 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.54 | 45.0 | 3.64e-01 | 96.8% | 76.4% |
| 1hlbA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.53 | 44.0 | 3.85e-01 | 96.8% | 85.4% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.53 | 39.0 | 3.89e-01 | 81.7% | 75.5% |
| 4f0uA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.51 | 42.0 | 3.69e-01 | 97.8% | 75.0% |
| 2qvwA04 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.51 | 43.0 | 3.76e-01 | 95.7% | 82.8% |
| 3ihuA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.50 | 42.0 | 3.69e-01 | 100.0% | 61.9% |
| 3juiA00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 43.0 | 3.45e-01 | 91.4% | 60.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3213593 | 3615.1.1.4 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Tmem26 | 0.72 | 64.0 | 4.63e-01 | 100.0% | 54.3% |
| 3503235 | 150.1.1.122 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › CECR6_TMEM121 | 0.68 | 62.0 | 4.42e-01 | 100.0% | 57.0% |
| 3741745 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.66 | 41.0 | 3.65e-01 | 100.0% | 44.6% |
| 3358332 | 592.2.1.2 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG | 0.64 | 53.0 | 4.91e-01 | 93.5% | 76.0% |
| 4364069 | 607.1.1.1 ↗ | alpha arrays › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain › PEP-utilisers_N | 0.64 | 46.0 | 4.20e-01 | 76.3% | 91.2% |
| 4028505 | 4207.1.2.47 ↗ | alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › MED7 hinge region › RIFIN | 0.63 | 56.0 | 4.79e-01 | 98.9% | 72.0% |
| 5007279 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.63 | 47.0 | 4.59e-01 | 80.6% | 98.1% |
| 4937585 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.61 | 47.0 | 4.51e-01 | 80.6% | 97.1% |
| 5043090 | 5058.1.1.16 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st_1 | 0.61 | 42.0 | 4.54e-01 | 72.0% | 100.0% |
| 4014288 | 509.1.1.0 ↗ | alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain | 0.60 | 47.0 | 4.95e-01 | 82.8% | 100.0% |
| 3620861 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.60 | 54.0 | 4.80e-01 | 100.0% | 88.9% |
| 3544521 | 904.1.1.1 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box | 0.59 | 44.0 | 3.81e-01 | 79.6% | 64.8% |
| 3444544 | 3615.1.1.0 ↗ | alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain | 0.59 | 52.0 | 4.38e-01 | 97.8% | 92.9% |
| 3406569 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.57 | 52.0 | 4.53e-01 | 100.0% | 90.6% |
| 4609538 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.56 | 43.0 | 3.97e-01 | 80.6% | 66.1% |
| 3958457 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.56 | 40.0 | 3.51e-01 | 75.3% | 55.7% |
| 3949864 | 632.1.1.37 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF6474 | 0.56 | 41.0 | 4.16e-01 | 78.5% | 94.4% |
| 3700663 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.55 | 42.0 | 4.15e-01 | 81.7% | 99.0% |
| 3497136 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.54 | 43.0 | 3.98e-01 | 90.3% | 99.2% |
| 3972686 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.54 | 39.0 | 3.47e-01 | 77.4% | 58.6% |
| 5050181 | 3291.1.1.1 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 | 0.51 | 47.0 | 3.82e-01 | 100.0% | 55.9% |
| 5060063 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.51 | 37.0 | 4.23e-01 | 79.6% | 100.0% |