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PH2015_18_scaffold_2_prodigal-single.1__X__X__00493
Bact-VirPH2015_18_scaffold_2_prodigal-single.1__X__X__00493
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-112_144-216
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3eaaA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.74 | 66.0 | 6.48e-01 | 94.7% | 90.1% |
| 4w64B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.74 | 64.0 | 6.25e-01 | 94.7% | 85.6% |
| 4hkhA00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.73 | 64.0 | 6.52e-01 | 95.4% | 93.3% |
| 3he1A00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.73 | 63.0 | 6.38e-01 | 94.7% | 91.8% |
| 1y12B00 | 2.30.110.20 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like | 0.72 | 64.0 | 6.32e-01 | 95.4% | 90.4% |
| 3uc2A00 | 2.60.40.3340 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4426 | 0.65 | 30.0 | 3.35e-01 | 74.2% | 53.2% |
| 4o38A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 35.0 | 4.37e-01 | 90.1% | 84.4% |
| 4divV01 | 2.40.30.200 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.62 | 50.0 | 5.26e-01 | 94.7% | 94.2% |
| 2rjzA02 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.62 | 37.0 | 4.45e-01 | 88.7% | 88.9% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.61 | 31.0 | 3.79e-01 | 75.5% | 76.7% |
| 3ne5C02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.59 | 34.0 | 3.99e-01 | 81.5% | 81.4% |
| 2fbjH02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 29.0 | 3.82e-01 | 77.5% | 93.2% |
| 7k0xA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 30.0 | 3.93e-01 | 87.4% | 96.2% |
| 1wapA00 | 2.60.40.50 | Mainly Beta › Sandwich › Immunoglobulin-like › TRAP-like | 0.55 | 24.0 | 3.42e-01 | 95.4% | 86.8% |
| 1dfaA03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.54 | 33.0 | 4.06e-01 | 88.7% | 96.8% |
| 1ao7B00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 31.0 | 3.75e-01 | 87.4% | 87.0% |
| 1zc3B00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 29.0 | 3.32e-01 | 81.5% | 70.6% |
| 2cq4A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 27.0 | 3.35e-01 | 80.8% | 76.3% |
| 7altB01 | 2.60.40.3510 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 35.0 | 3.50e-01 | 94.0% | 63.9% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.51 | 30.0 | 3.65e-01 | 92.1% | 91.4% |
| 2ltjA00 | 2.20.230.10 | Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. | 0.51 | 23.0 | 2.65e-01 | 98.7% | 55.0% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 30.0 | 3.72e-01 | 88.1% | 100.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003885 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.84 | 70.0 | 7.19e-01 | 93.4% | 91.0% |
| 2471641 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.82 | 69.0 | 6.98e-01 | 93.4% | 89.3% |
| 2832217 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.81 | 69.0 | 7.14e-01 | 93.4% | 94.4% |
| 3058416 | 1.1.5.39 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › TssD | 0.80 | 60.0 | 6.52e-01 | 92.7% | 91.3% |
| 2471637 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.79 | 70.0 | 7.07e-01 | 94.0% | 94.0% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.79 | 56.0 | 6.35e-01 | 92.1% | 94.8% |
| 3581358 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.78 | 69.0 | 6.84e-01 | 92.1% | 91.0% |
| 4957560 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.78 | 63.0 | 6.74e-01 | 92.1% | 98.5% |
| 4929634 | 1.1.5.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 | 0.77 | 59.0 | 4.79e-01 | 91.4% | 44.4% |
| 2101663 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.77 | 66.0 | 6.47e-01 | 90.7% | 88.3% |
| 4995819 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.77 | 68.0 | 6.88e-01 | 94.0% | 100.0% |
| 3023894 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.76 | 66.0 | 6.66e-01 | 91.4% | 92.6% |
| 4995820 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.76 | 63.0 | 6.76e-01 | 92.1% | 100.0% |
| 2101633 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.76 | 63.0 | 6.05e-01 | 94.7% | 78.4% |
| 4009489 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 65.0 | 6.51e-01 | 94.0% | 89.0% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.74 | 66.0 | 6.57e-01 | 93.4% | 94.1% |
| 4929752 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 65.0 | 6.52e-01 | 94.7% | 90.3% |
| 5078836 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.74 | 53.0 | 6.09e-01 | 92.7% | 100.0% |
| 136185 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 66.0 | 6.48e-01 | 94.7% | 90.1% |
| 1563850 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.74 | 64.0 | 6.25e-01 | 94.7% | 85.6% |
| 2074267 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.73 | 66.0 | 6.45e-01 | 94.7% | 92.5% |
| 3966479 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 66.0 | 6.40e-01 | 94.7% | 93.9% |
| 2674670 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.73 | 64.0 | 6.15e-01 | 100.0% | 82.6% |
| 3942477 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.73 | 66.0 | 6.43e-01 | 95.4% | 90.2% |
| 3976188 | 1.1.13.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tube | 0.73 | 61.0 | 5.94e-01 | 95.4% | 81.2% |
| 3096576 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.73 | 63.0 | 6.25e-01 | 92.1% | 87.4% |
| 4888726 | 1.1.13.6 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 | 0.72 | 65.0 | 6.36e-01 | 100.0% | 89.0% |
| 4982153 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.72 | 62.0 | 5.02e-01 | 94.0% | 50.4% |
| 5004308 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.72 | 64.0 | 6.38e-01 | 94.7% | 94.8% |
| 80 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.72 | 65.0 | 6.40e-01 | 95.4% | 90.6% |
| 3977123 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.71 | 63.0 | 6.24e-01 | 95.4% | 88.7% |
| 3969384 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 63.0 | 6.23e-01 | 95.4% | 91.3% |
| 3943681 | 1.1.13.47 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like | 0.70 | 59.0 | 5.95e-01 | 89.4% | 98.0% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.69 | 57.0 | 6.09e-01 | 89.4% | 99.3% |
| 3265120 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.69 | 62.0 | 5.91e-01 | 96.0% | 86.9% |
| 3264744 | 1.1.5.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › T6SS_HCP | 0.68 | 61.0 | 5.81e-01 | 96.0% | 86.9% |
| 3164699 | 1.1.13.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DNA_circ_N | 0.67 | 49.0 | 5.46e-01 | 89.4% | 99.1% |
| 4033579 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.64 | 50.0 | 5.47e-01 | 87.4% | 100.0% |
| 4954561 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 53.0 | 5.62e-01 | 90.7% | 100.0% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.63 | 53.0 | 5.57e-01 | 88.7% | 100.0% |
| 1444177 | 1.1.13.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins | 0.63 | 50.0 | 5.26e-01 | 91.4% | 93.4% |
| 3980535 | 1.1.13.51 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU | 0.62 | 53.0 | 5.55e-01 | 95.4% | 100.0% |
| 4888732 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.62 | 51.0 | 5.05e-01 | 94.7% | 83.3% |
| 4032562 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.62 | 50.0 | 5.35e-01 | 90.1% | 100.0% |
| 3281573 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.62 | 43.0 | 4.59e-01 | 94.7% | 80.0% |
| 184986 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.62 | 48.0 | 5.28e-01 | 90.7% | 99.2% |
| 5004559 | 1.1.13.75 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CIS_tube | 0.61 | 50.0 | 5.23e-01 | 87.4% | 100.0% |
| 3602499 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.59 | 45.0 | 4.80e-01 | 94.0% | 92.3% |
| 3367922 | 304.8.1.45 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant | 0.59 | 34.0 | 4.15e-01 | 99.3% | 89.5% |
| 3367441 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.58 | 34.0 | 4.06e-01 | 99.3% | 85.9% |
| 3884647 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.58 | 31.0 | 3.37e-01 | 92.1% | 60.0% |
| 4075278 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 30.0 | 3.48e-01 | 93.4% | 69.1% |
| 3884048 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 30.0 | 3.29e-01 | 93.4% | 60.8% |
| 5067070 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.56 | 45.0 | 4.67e-01 | 93.4% | 91.4% |
| 5026284 | 4.15.1.2 ↗ | beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 | 0.55 | 31.0 | 3.81e-01 | 92.7% | 87.4% |
| 3478734 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 40.0 | 4.41e-01 | 88.1% | 95.0% |
| 138581 | 11.1.1.96 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set | 0.54 | 32.0 | 3.80e-01 | 87.4% | 88.7% |
| 3183073 | 1.1.5.10 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct | 0.53 | 46.0 | 3.78e-01 | 93.4% | 53.0% |
| 3966645 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.51 | 39.0 | 4.19e-01 | 88.1% | 95.2% |
| 3471366 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 38.0 | 4.14e-01 | 86.8% | 93.6% |