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PH2015_20_scaffold_1_prodigal-single.1__X__X__00022
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00022
Identity
- Kingdom:
- phage
Quality
76.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-125
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6n3oA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.64 | 41.0 | 4.66e-01 | 93.3% | 85.6% |
| 4gt4B01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 38.0 | 4.38e-01 | 93.3% | 85.7% |
| 3rgfA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.62 | 38.0 | 4.18e-01 | 93.3% | 76.0% |
| 6k3lB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.61 | 38.0 | 4.25e-01 | 93.3% | 81.3% |
| 3d7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 36.0 | 4.21e-01 | 93.3% | 87.7% |
| 3s95A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 37.0 | 4.25e-01 | 93.3% | 85.2% |
| 4zevA02 | 3.30.1240.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › | 0.60 | 44.0 | 4.62e-01 | 75.8% | 97.2% |
| 4redB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.60 | 38.0 | 4.40e-01 | 93.3% | 91.7% |
| 3bguA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 40.0 | 4.36e-01 | 71.7% | 84.4% |
| 3g2fA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 37.0 | 4.23e-01 | 93.3% | 87.4% |
| 6vp6A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 35.0 | 4.07e-01 | 93.3% | 85.5% |
| 1s9iB01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 36.0 | 3.99e-01 | 94.2% | 78.5% |
| 4euuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.58 | 38.0 | 4.25e-01 | 93.3% | 88.8% |
| 5d4nC00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 39.0 | 4.28e-01 | 71.7% | 84.7% |
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.57 | 31.0 | 3.99e-01 | 90.8% | 100.0% |
| 2qndA02 | 3.30.1370.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 | 0.56 | 29.0 | 3.46e-01 | 75.8% | 73.8% |
| 3kmuA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 35.0 | 3.93e-01 | 94.2% | 86.2% |
| 4pxdA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 39.0 | 4.02e-01 | 74.2% | 86.1% |
| 2lxiA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 34.0 | 3.77e-01 | 72.5% | 81.3% |
| 1zm8A00 | 3.40.570.10 | Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A | 0.54 | 47.0 | 3.82e-01 | 99.2% | 89.5% |
| 3atsA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.54 | 39.0 | 4.04e-01 | 94.2% | 80.2% |
| 5w7tA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.53 | 40.0 | 4.34e-01 | 95.0% | 97.9% |
| 1nbeB01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.53 | 37.0 | 4.17e-01 | 93.3% | 95.7% |
| 1in0A02 | 3.30.70.990 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YajQ-like, domain 2 | 0.52 | 37.0 | 4.12e-01 | 75.8% | 95.7% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 36.0 | 3.86e-01 | 72.5% | 86.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981390 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.68 | 43.0 | 5.16e-01 | 74.2% | 96.2% |
| 3553717 | 206.1.1.76 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, Pkinase_fungal | 0.65 | 42.0 | 3.11e-01 | 93.3% | 25.5% |
| 4998402 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.62 | 38.0 | 4.21e-01 | 72.5% | 76.8% |
| 3503652 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.62 | 41.0 | 3.01e-01 | 93.3% | 25.6% |
| 3175696 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.61 | 41.0 | 3.04e-01 | 96.7% | 27.3% |
| 5176 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.60 | 41.0 | 4.43e-01 | 72.5% | 83.2% |
| 3728140 | 304.4.1.4 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM | 0.59 | 37.0 | 3.60e-01 | 70.0% | 54.8% |
| 3252414 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 41.0 | 3.07e-01 | 98.3% | 28.2% |
| 3470391 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.59 | 39.0 | 2.78e-01 | 93.3% | 22.9% |
| None | — | 0.58 | 38.0 | 2.87e-01 | 93.3% | 26.6% | |
| 4410723 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.57 | 38.0 | 4.07e-01 | 74.2% | 78.1% |
| 3916009 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.57 | 39.0 | 3.41e-01 | 94.2% | 44.7% |
| 4949429 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.57 | 35.0 | 3.71e-01 | 100.0% | 69.5% |
| 3589403 | 304.124.1.0 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like | 0.56 | 43.0 | 4.30e-01 | 80.0% | 95.0% |
| 4961623 | 304.8.1.115 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › T2SSM_b | 0.56 | 35.0 | 3.93e-01 | 70.8% | 83.3% |
| 3789222 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 35.0 | 3.62e-01 | 72.5% | 67.3% |
| 4836887 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.55 | 36.0 | 2.74e-01 | 93.3% | 27.2% |
| 3177508 | 206.1.1.74 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr | 0.54 | 45.0 | 3.22e-01 | 100.0% | 30.8% |
| 3991153 | 206.1.1.20 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr | 0.54 | 43.0 | 3.27e-01 | 100.0% | 35.8% |
| 3175551 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 43.0 | 3.67e-01 | 90.0% | 72.0% |
| 4025870 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.52 | 32.0 | 3.89e-01 | 96.7% | 97.3% |
| 3223591 | 207.1.1.247 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF28313 | 0.52 | 46.0 | 3.33e-01 | 100.0% | 47.1% |
| 5058881 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 37.0 | 2.74e-01 | 75.0% | 83.5% |
| 3934937 | 873.1.1.5 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB | 0.51 | 36.0 | 3.14e-01 | 73.3% | 52.1% |
| 3196562 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 45.0 | 4.12e-01 | 100.0% | 97.0% |
| 4940452 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.51 | 35.0 | 3.64e-01 | 85.0% | 75.7% |