←Back to structures
PH2015_20_scaffold_1_prodigal-single.1__X__X__00025
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00025
Identity
- Kingdom:
- phage
Quality
68.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 35-116
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2bs6A01 | 2.40.128.190 | Mainly Beta › Beta Barrel › Lipocalin › | 0.65 | 43.0 | 4.36e-01 | 85.4% | 67.9% |
| 3o4hA01 | 2.130.10.150 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain | 0.63 | 53.0 | 3.56e-01 | 91.5% | 29.3% |
| 1e5tA02 | 2.130.10.120 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain | 0.61 | 51.0 | 3.35e-01 | 91.5% | 30.6% |
| 3e5zA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.61 | 50.0 | 3.43e-01 | 90.2% | 37.9% |
| 4eqaC00 | 2.40.128.650 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 48.0 | 3.97e-01 | 86.6% | 66.0% |
| 3sreA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.61 | 49.0 | 3.29e-01 | 93.9% | 22.2% |
| 2xqyA01 | 3.30.500.50 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › | 0.60 | 49.0 | 3.88e-01 | 91.5% | 89.9% |
| 7mhuA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.60 | 49.0 | 3.22e-01 | 90.2% | 42.3% |
| 3ei3A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 50.0 | 3.34e-01 | 92.7% | 45.8% |
| 4a2lF02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 49.0 | 3.30e-01 | 91.5% | 38.6% |
| 4ozuA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 49.0 | 3.22e-01 | 91.5% | 25.4% |
| 5gtqA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 47.0 | 3.23e-01 | 89.0% | 52.4% |
| 1rwiA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.58 | 51.0 | 3.60e-01 | 97.6% | 39.5% |
| 2ghsA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 46.0 | 3.18e-01 | 89.0% | 52.9% |
| 3hfqA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 47.0 | 3.11e-01 | 91.5% | 25.0% |
| 1yemB00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.57 | 44.0 | 3.52e-01 | 84.1% | 52.4% |
| 1st8A01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 49.0 | 3.29e-01 | 97.6% | 54.7% |
| 2giaA00 | 2.30.31.40 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › | 0.57 | 44.0 | 3.61e-01 | 84.1% | 79.2% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.57 | 45.0 | 3.12e-01 | 86.6% | 88.7% |
| 1eovA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 39.0 | 3.31e-01 | 72.0% | 81.3% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.56 | 46.0 | 3.27e-01 | 92.7% | 28.8% |
| 1lfoA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 40.0 | 3.58e-01 | 79.3% | 96.1% |
| 1yqfB00 | 3.10.280.10 | Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein | 0.54 | 41.0 | 3.24e-01 | 80.5% | 47.5% |
| 2qq6A01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 41.0 | 3.66e-01 | 80.5% | 97.4% |
| 2ichA01 | 2.40.370.10 | Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain | 0.54 | 43.0 | 3.45e-01 | 90.2% | 85.5% |
| 1x99A00 | 2.60.270.20 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin | 0.54 | 40.0 | 3.44e-01 | 81.7% | 81.4% |
| 1b9vA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 44.0 | 2.97e-01 | 98.8% | 57.7% |
| 2k2jA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 36.0 | 3.25e-01 | 78.0% | 49.6% |
| 2jkgA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.52 | 41.0 | 3.31e-01 | 86.6% | 50.3% |
| 2durB01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 3.20e-01 | 98.8% | 83.8% |
| 3rf9B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 38.0 | 2.65e-01 | 81.7% | 94.8% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3233005 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.70 | 49.0 | 3.46e-01 | 86.6% | 23.5% |
| 4939442 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 55.0 | 3.69e-01 | 95.1% | 31.5% |
| 3482303 | 5.1.4.8 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH | 0.64 | 54.0 | 3.52e-01 | 91.5% | 25.7% |
| 4015863 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 52.0 | 3.44e-01 | 90.2% | 38.6% |
| 3721353 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.64 | 52.0 | 3.44e-01 | 90.2% | 41.4% |
| 3941131 | 5.1.4.36 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N | 0.63 | 53.0 | 3.46e-01 | 92.7% | 26.3% |
| 3936285 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 52.0 | 3.59e-01 | 91.5% | 34.9% |
| 4927376 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 50.0 | 3.31e-01 | 89.0% | 67.5% |
| 5018346 | 5.1.3.22 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH | 0.62 | 51.0 | 3.32e-01 | 90.2% | 30.9% |
| 3440815 | 5.1.11.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Beta-prop_AT5G49610-like | 0.62 | 45.0 | 3.01e-01 | 78.0% | 41.8% |
| 4988423 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.61 | 47.0 | 4.79e-01 | 82.9% | 90.0% |
| 3970026 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.61 | 50.0 | 3.37e-01 | 90.2% | 27.7% |
| 3925754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.60 | 38.0 | 3.25e-01 | 78.0% | 38.5% |
| 5081947 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.59 | 50.0 | 3.33e-01 | 93.9% | 44.5% |
| 3445416 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.58 | 48.0 | 3.19e-01 | 92.7% | 30.0% |
| 3244934 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 40.0 | 2.75e-01 | 76.8% | 18.2% |
| 4019954 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.58 | 50.0 | 3.26e-01 | 95.1% | 46.0% |
| 3219544 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.58 | 46.0 | 3.18e-01 | 87.8% | 27.1% |
| 4947855 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 49.0 | 3.12e-01 | 97.6% | 47.7% |
| 4951147 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.56 | 39.0 | 3.46e-01 | 86.6% | 48.3% |
| 3602276 | 881.4.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 | 0.56 | 37.0 | 3.20e-01 | 85.4% | 41.5% |
| 3379750 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.56 | 41.0 | 3.47e-01 | 78.0% | 84.3% |
| 3308188 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.56 | 40.0 | 3.43e-01 | 76.8% | 71.4% |
| 3559756 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.55 | 45.0 | 3.06e-01 | 92.7% | 50.9% |
| 3512735 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.55 | 39.0 | 2.96e-01 | 78.0% | 60.9% |
| 5047088 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.54 | 48.0 | 3.55e-01 | 100.0% | 65.5% |
| 4672246 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.53 | 42.0 | 3.46e-01 | 85.4% | 96.0% |
| 3480535 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 45.0 | 4.18e-01 | 93.9% | 83.8% |
| 3717304 | 5.1.5.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed | 0.52 | 44.0 | 3.07e-01 | 97.6% | 81.9% |
| 3615998 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.52 | 42.0 | 2.81e-01 | 92.7% | 40.0% |
| 5074419 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.52 | 39.0 | 4.32e-01 | 82.9% | 100.0% |
| 4961843 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 38.0 | 2.74e-01 | 78.0% | 59.6% |
| 4956103 | 512.1.1.1 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st | 0.51 | 38.0 | 3.98e-01 | 89.0% | 89.3% |
| 3893973 | 10.1.1.17 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 | 0.50 | 44.0 | 3.42e-01 | 96.3% | 63.4% |
| 5029671 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.50 | 42.0 | 3.39e-01 | 91.5% | 88.7% |