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PH2015_20_scaffold_1_prodigal-single.1__X__X__00189
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00189
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-81_162-176
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j8gA03 | 2.20.120.10 | Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 | 0.70 | 24.0 | 2.96e-01 | 100.0% | 44.8% |
| 3igfA02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.66 | 49.0 | 5.25e-01 | 100.0% | 91.9% |
| 3fvqA03 | 2.40.50.470 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.64 | 23.0 | 2.80e-01 | 98.9% | 44.8% |
| 3aiiA03 | 2.40.240.10 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P | 0.64 | 28.0 | 2.85e-01 | 74.7% | 39.3% |
| 1vx7H01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.62 | 40.0 | 4.12e-01 | 93.1% | 67.1% |
| 1qqgA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 39.0 | 3.72e-01 | 70.1% | 97.1% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 48.0 | 3.36e-01 | 93.1% | 96.2% |
| 4q1vA01 | 2.140.10.30 | Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain | 0.57 | 43.0 | 2.71e-01 | 82.8% | 15.4% |
| 4aqzA00 | 2.60.40.3470 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 50.0 | 4.32e-01 | 100.0% | 71.0% |
| 3u4yA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 42.0 | 2.81e-01 | 81.6% | 23.8% |
| 4hhvA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.71e-01 | 75.9% | 93.2% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.54 | 37.0 | 2.26e-01 | 71.3% | 20.0% |
| 4csdB00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.53 | 40.0 | 2.84e-01 | 80.5% | 30.0% |
| 3w1zC00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 46.0 | 4.09e-01 | 100.0% | 70.0% |
| 3m5kA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 46.0 | 3.78e-01 | 100.0% | 58.9% |
| 1wiiA01 | 2.20.25.190 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.52 | 30.0 | 3.38e-01 | 77.0% | 77.4% |
| 1zchA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.52 | 46.0 | 3.35e-01 | 100.0% | 47.0% |
| 3gr3A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 45.0 | 3.40e-01 | 100.0% | 65.9% |
| 1g29102 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 27.0 | 3.50e-01 | 96.6% | 95.6% |
| 3e10A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 45.0 | 3.68e-01 | 100.0% | 60.8% |
| 4xomB00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.51 | 45.0 | 3.44e-01 | 100.0% | 63.9% |
| 2gtiA01 | 3.30.160.820 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Nsp15 N-terminal domain-like | 0.51 | 31.0 | 3.53e-01 | 86.2% | 84.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5030534 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.69 | 51.0 | 5.40e-01 | 100.0% | 89.3% |
| 4928207 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.68 | 54.0 | 5.73e-01 | 100.0% | 97.3% |
| 4998173 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.68 | 51.0 | 5.47e-01 | 100.0% | 94.7% |
| 5025855 | 319.1.1.4 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 | 0.66 | 49.0 | 5.33e-01 | 97.7% | 97.1% |
| 3514431 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.66 | 23.0 | 3.26e-01 | 100.0% | 62.5% |
| 5022841 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.64 | 44.0 | 4.25e-01 | 92.0% | 63.0% |
| 4028760 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.63 | 52.0 | 4.73e-01 | 100.0% | 67.8% |
| 4934590 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.61 | 44.0 | 4.36e-01 | 100.0% | 71.6% |
| 3865742 | 319.1.1.12 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS_DNAAF11_C | 0.59 | 46.0 | 4.68e-01 | 100.0% | 87.1% |
| 3411522 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.59 | 44.0 | 4.55e-01 | 100.0% | 86.3% |
| 3518872 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.59 | 31.0 | 3.79e-01 | 78.2% | 80.0% |
| 990993 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.58 | 32.0 | 4.08e-01 | 81.6% | 95.9% |
| 3701705 | 319.1.1.5 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS | 0.58 | 53.0 | 5.06e-01 | 100.0% | 92.0% |
| 3500367 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.58 | 44.0 | 4.43e-01 | 100.0% | 81.1% |
| 3224950 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.56 | 41.0 | 3.86e-01 | 75.9% | 94.3% |
| 3577264 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 38.0 | 3.24e-01 | 70.1% | 50.0% |
| 3231890 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.55 | 29.0 | 3.61e-01 | 79.3% | 95.5% |
| 3191238 | 719.2.1.0 ↗ | beta barrels › XRCC4, N-terminal domain-like › NE0471 N-terminal domain-like › NE0471 N-terminal domain-like | 0.55 | 41.0 | 4.02e-01 | 79.3% | 86.3% |
| 3992786 | 11.1.1.1176 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-prop_Rol-3 | 0.55 | 41.0 | 2.83e-01 | 79.3% | 53.1% |
| 4028407 | 319.1.1.3 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS | 0.55 | 48.0 | 4.35e-01 | 100.0% | 86.7% |
| 3734376 | 220.1.1.33 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 | 0.54 | 38.0 | 3.58e-01 | 73.6% | 91.8% |
| 3923930 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.54 | 38.0 | 3.53e-01 | 73.6% | 92.7% |
| 5066808 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.54 | 42.0 | 3.84e-01 | 100.0% | 61.8% |
| 3176830 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 42.0 | 3.93e-01 | 86.2% | 95.5% |
| 3890750 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 36.0 | 3.64e-01 | 71.3% | 100.0% |
| 5028887 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 32.0 | 3.30e-01 | 100.0% | 62.4% |
| 3927123 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 37.0 | 3.04e-01 | 75.9% | 78.3% |
| 3272546 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 38.0 | 3.41e-01 | 77.0% | 89.6% |
| 3627795 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 38.0 | 3.86e-01 | 78.2% | 84.7% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.52 | 41.0 | 3.34e-01 | 90.8% | 91.9% |
| 3936608 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 37.0 | 3.47e-01 | 77.0% | 97.3% |
| 3792816 | 220.1.1.33 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 | 0.51 | 37.0 | 3.39e-01 | 77.0% | 67.5% |
| 1270095 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 35.0 | 3.46e-01 | 90.8% | 67.0% |
| 4379527 | 101.1.2.70 ↗ | alpha arrays › HTH › HTH › winged helix domain › PqqD | 0.51 | 36.0 | 3.65e-01 | 72.4% | 82.4% |
| 3244890 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.51 | 36.0 | 3.33e-01 | 77.0% | 84.2% |
| 5077089 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 35.0 | 3.83e-01 | 72.4% | 95.7% |
D2
high
residues 86-156
Domain cluster:
representative