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PH2015_20_scaffold_1_prodigal-single.1__X__X__00224

Bact-Vir

PH2015_20_scaffold_1_prodigal-single.1__X__X__00224

Identity

Kingdom:
phage

Quality

96.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 41-169
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00908.24 best dTDP_sugar_isom 79.2 4.30e-22 100.0% 72.0%
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.95 88.0 7.81e-01 98.4% 71.1%
3rykA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.94 90.0 7.88e-01 98.4% 72.0%
1wltA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.94 87.0 7.65e-01 100.0% 69.9%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.91 88.0 7.34e-01 100.0% 63.9%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.88 82.0 7.00e-01 100.0% 64.4%
4mzuF02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.88 60.0 5.70e-01 100.0% 60.8%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 71.0 6.61e-01 86.8% 71.3%
5cu1A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 55.0 4.68e-01 98.4% 43.1%
4b29A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 53.0 4.53e-01 96.9% 42.1%
2b8mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.84 50.0 5.48e-01 71.3% 71.6%
3eqeA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.83 58.0 5.41e-01 78.3% 59.0%
4o9gA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.82 58.0 5.66e-01 100.0% 67.4%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.81 60.0 5.54e-01 100.0% 61.6%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.81 53.0 5.95e-01 72.1% 83.5%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 59.0 5.16e-01 97.7% 53.8%
2atfA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 59.0 5.10e-01 100.0% 54.3%
1uijB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 61.0 5.56e-01 100.0% 64.2%
5fljA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 61.0 5.36e-01 82.9% 70.3%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 55.0 5.70e-01 95.3% 78.5%
2xlgA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 61.0 4.92e-01 82.9% 66.8%
3es1A02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 48.0 4.94e-01 100.0% 66.7%
4qmaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 57.0 5.53e-01 98.4% 71.3%
1gqgC02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 60.0 5.20e-01 83.7% 67.2%
2yu2A01 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.75 53.0 4.02e-01 72.9% 42.3%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 63.0 5.86e-01 94.6% 73.5%
1j3qB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 63.0 5.54e-01 99.2% 62.8%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 59.0 5.06e-01 100.0% 57.0%
1xe7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.72 63.0 5.51e-01 94.6% 64.5%
2y0oA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 59.0 5.33e-01 96.9% 65.5%
3s7iB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.71 60.0 5.20e-01 87.6% 73.5%
2e9qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 59.0 4.77e-01 86.8% 75.7%
7lvzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.70 64.0 5.18e-01 95.3% 65.6%
2vqaC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 59.0 5.25e-01 95.3% 67.2%
4lejA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 60.0 5.45e-01 94.6% 76.9%
6l9iA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 59.0 5.19e-01 94.6% 66.1%
1fxzA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 61.0 5.56e-01 95.3% 75.6%
2vqaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.67 60.0 5.33e-01 95.3% 68.9%
5cadA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 60.0 5.19e-01 94.6% 70.4%
3ww3A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.66 61.0 4.81e-01 96.1% 59.2%
5wxuA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 59.0 5.37e-01 94.6% 75.9%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 35.0 3.72e-01 93.0% 57.4%
5wxuD01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 58.0 4.63e-01 94.6% 65.4%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 58.0 5.27e-01 99.2% 75.3%
6qdiA02 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.62 44.0 4.36e-01 72.9% 83.2%
4fcaA01 2.60.120.1250 Mainly Beta › Sandwich › Jelly Rolls › Peptidase M60, enhancin-like domain 1 0.62 44.0 4.76e-01 72.9% 97.2%
3c3vA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 58.0 4.60e-01 100.0% 53.6%
3kglB01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 58.0 4.74e-01 100.0% 58.7%
2waoA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.62 45.0 4.76e-01 93.0% 87.4%
6qe7A01 3.90.182.10 Alpha Beta › Alpha-Beta Complex › Toxin - Anthrax Protective Antigen; domain 1 › Toxin - Anthrax Protective Antigen;domain 1 0.61 44.0 4.32e-01 73.6% 83.1%
3purA02 2.60.120.650 Mainly Beta › Sandwich › Jelly Rolls › Cupin 0.60 53.0 3.96e-01 93.8% 42.8%
1ft9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 34.0 3.44e-01 100.0% 55.7%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 4.07e-01 72.1% 95.2%
1gqgC01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 39.0 3.80e-01 70.5% 82.9%
4kg8A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 36.0 3.61e-01 90.7% 69.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1674686 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.96 89.0 7.85e-01 98.4% 71.5%
3966805 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.93 89.0 7.77e-01 100.0% 70.6%
3282976 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.93 88.0 7.69e-01 100.0% 70.0%
163278 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.92 88.0 7.33e-01 100.0% 62.4%
3958126 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.91 88.0 7.37e-01 100.0% 64.5%
4945023 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.90 87.0 7.45e-01 100.0% 68.4%
976738 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.90 87.0 7.27e-01 100.0% 64.5%
4987174 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.90 57.0 5.93e-01 96.9% 69.2%
5012735 7516.1.1.1 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase 0.89 58.0 3.79e-01 94.6% 18.5%
4949707 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.89 58.0 5.05e-01 94.6% 47.2%
3971446 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.89 58.0 6.20e-01 94.6% 74.8%
4954842 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.89 56.0 6.35e-01 73.6% 82.0%
4419958 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.89 54.0 5.68e-01 75.2% 66.7%
1296 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.88 82.0 7.00e-01 100.0% 64.4%
4977034 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.88 55.0 5.81e-01 74.4% 70.4%
5030047 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.88 57.0 6.30e-01 92.2% 81.0%
4174964 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.87 59.0 5.12e-01 93.0% 48.1%
3973758 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.87 60.0 6.42e-01 96.1% 79.8%
4942033 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.86 59.0 6.26e-01 95.3% 78.9%
3838063 10.12.1.98 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MannoseP_isomer 0.86 59.0 6.05e-01 96.1% 72.8%
2877254 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 82.0 7.07e-01 100.0% 69.7%
169093 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 71.0 6.61e-01 86.8% 71.3%
4996864 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 70.0 6.32e-01 86.0% 70.0%
5002053 7516.1.1.187 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › MannoseP_isomer 0.85 60.0 3.92e-01 97.7% 19.6%
5058618 10.12.1.4 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › dTDP_sugar_isom 0.85 70.0 6.49e-01 86.0% 70.4%
3973004 208.4.1.0 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain › Guanosine diphospho-D-mannose pyrophosphorylase/mannose-6-phosphate isomerase linker domain 0.84 61.0 5.17e-01 99.2% 49.2%
4957850 10.12.1.100 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Polysacc_synt_C 0.84 71.0 6.67e-01 89.1% 75.3%
3673964 10.12.1.7 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Auxin_BP 0.82 60.0 5.26e-01 100.0% 53.0%
None 0.82 61.0 5.53e-01 100.0% 60.0%
4961572 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 52.0 5.24e-01 92.2% 65.4%
134743 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 54.0 5.74e-01 72.9% 78.1%
3969466 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 44.0 4.60e-01 71.3% 59.2%
1180001 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 49.0 4.70e-01 72.1% 55.9%
5063647 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.74 65.0 5.22e-01 99.2% 51.1%
3905626 10.12.1.122 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PF29328 0.73 42.0 3.83e-01 91.5% 43.5%
5037452 10.12.1.22 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › KduI 0.73 61.0 4.70e-01 96.1% 41.9%
4958880 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.73 47.0 5.46e-01 71.3% 88.4%
3946973 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.73 49.0 5.28e-01 89.9% 78.8%
3449844 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.72 60.0 5.06e-01 100.0% 54.6%
4019026 10.12.1.29 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › CDO_I 0.72 55.0 4.48e-01 97.7% 44.8%
4955931 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.72 66.0 5.42e-01 99.2% 58.1%
3205583 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.72 47.0 4.96e-01 90.7% 73.9%
4443179 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.71 64.0 5.42e-01 100.0% 60.0%
4945887 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.70 65.0 5.16e-01 99.2% 51.8%
5019528 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.70 66.0 5.23e-01 99.2% 53.3%
5074129 10.12.1.34 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › GPI 0.69 64.0 5.12e-01 99.2% 53.6%
4016615 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.68 61.0 5.22e-01 94.6% 66.7%
3283885 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.67 60.0 5.29e-01 94.6% 71.1%
3817104 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.67 60.0 4.93e-01 94.6% 61.4%
1810876 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.66 60.0 5.28e-01 94.6% 74.0%
4049904 10.12.1.62 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_cat 0.66 53.0 4.20e-01 100.0% 44.1%
3787369 10.12.1.62 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_cat 0.66 53.0 4.35e-01 100.0% 49.1%
5013355 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.65 39.0 4.63e-01 89.9% 89.4%
3419866 10.12.1.3 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 0.64 58.0 4.36e-01 94.6% 53.0%
None 0.63 57.0 5.11e-01 99.2% 71.8%
4608068 10.12.1.30 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › 3-HAO 0.63 57.0 5.02e-01 100.0% 68.5%
5027060 5095.1.1.1 beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.62 44.0 4.39e-01 72.9% 86.2%
4000173 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.55 44.0 4.72e-01 91.5% 100.0%
4341145 10.32.1.238 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29980 0.54 47.0 4.58e-01 95.3% 95.0%
3889345 10.3.1.1 beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF 0.52 38.0 3.70e-01 90.7% 67.4%