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PH2015_20_scaffold_1_prodigal-single.1__X__X__00239
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00239
Identity
- Kingdom:
- phage
Quality
94.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-53
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6g1nD01 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.73 | 58.0 | 4.91e-01 | 98.0% | 53.0% |
| 1ncsA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.72 | 55.0 | 5.63e-01 | 100.0% | 93.6% |
| 2k7iA01 | 3.30.160.160 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like | 0.71 | 56.0 | 5.72e-01 | 88.0% | 93.8% |
| 4p78A00 | 3.30.160.250 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.66 | 52.0 | 4.40e-01 | 100.0% | 52.3% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.64 | 51.0 | 4.97e-01 | 100.0% | 84.2% |
| 5m1pB00 | 3.30.420.240 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.63 | 50.0 | 3.40e-01 | 90.0% | 25.4% |
| 6ui4A01 | 1.20.120.720 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain | 0.62 | 52.0 | 4.41e-01 | 98.0% | 81.8% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 53.0 | 4.87e-01 | 100.0% | 80.6% |
| 3io5A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 51.0 | 3.30e-01 | 100.0% | 20.7% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.59 | 49.0 | 4.01e-01 | 98.0% | 65.4% |
| 1c9rA04 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.59 | 47.0 | 3.79e-01 | 94.0% | 54.2% |
| 3hr8A02 | 3.30.250.10 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain | 0.59 | 47.0 | 4.24e-01 | 96.0% | 62.7% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 45.0 | 3.18e-01 | 90.0% | 47.5% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 45.0 | 3.55e-01 | 90.0% | 39.1% |
| 7z2bK01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.58 | 48.0 | 3.08e-01 | 100.0% | 28.1% |
| 6h9dA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 47.0 | 3.48e-01 | 100.0% | 35.8% |
| 2bolB02 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 44.0 | 3.41e-01 | 94.0% | 83.6% |
| 4pqdA00 | 3.90.570.10 | Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain | 0.55 | 42.0 | 3.54e-01 | 94.0% | 47.6% |
| 4tvcA01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.55 | 43.0 | 3.00e-01 | 90.0% | 48.9% |
| 3kihC01 | 2.20.25.510 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 34.0 | 3.88e-01 | 74.0% | 88.2% |
| 2d5wA03 | 3.10.105.10 | Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 | 0.55 | 48.0 | 3.10e-01 | 100.0% | 73.0% |
| 2vhjA02 | 2.30.270.20 | Mainly Beta › Roll › duf1285 protein fold › | 0.54 | 40.0 | 3.81e-01 | 82.0% | 88.7% |
| 3f0zA01 | 3.30.310.260 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › | 0.53 | 41.0 | 3.40e-01 | 96.0% | 98.2% |
| 4r7rA00 | 3.30.1490.410 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 | 0.53 | 35.0 | 2.83e-01 | 72.0% | 75.4% |
| 1fbwA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 40.0 | 2.38e-01 | 88.0% | 14.8% |
| 3cobC00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.52 | 44.0 | 2.72e-01 | 100.0% | 26.5% |
| 3kz5E00 | 6.10.140.1550 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 35.0 | 3.62e-01 | 72.0% | 75.0% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 40.0 | 3.32e-01 | 88.0% | 45.8% |
| 3syjA02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.51 | 34.0 | 1.99e-01 | 94.0% | 5.7% |
| 1f44A01 | 1.10.443.10 | Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core | 0.51 | 40.0 | 2.78e-01 | 94.0% | 52.1% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3671921 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.80 | 65.0 | 6.34e-01 | 88.0% | 80.0% |
| 3969097 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.80 | 66.0 | 6.60e-01 | 90.0% | 88.0% |
| 3954708 | 4325.1.1.9 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26003 | 0.78 | 67.0 | 6.77e-01 | 96.0% | 96.0% |
| 4297945 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.76 | 64.0 | 6.26e-01 | 96.0% | 85.5% |
| 4341865 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.75 | 64.0 | 6.23e-01 | 94.0% | 85.5% |
| 7726 | 4325.1.1.1 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF1508 | 0.75 | 61.0 | 5.81e-01 | 90.0% | 79.3% |
| 4950216 | 4100.1.1.3 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox | 0.74 | 57.0 | 5.84e-01 | 96.0% | 89.6% |
| 3671924 | 4325.1.1.12 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › AP2 | 0.73 | 53.0 | 5.85e-01 | 80.0% | 100.0% |
| 4012540 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 64.0 | 5.60e-01 | 100.0% | 81.3% |
| 5075488 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.71 | 55.0 | 5.04e-01 | 98.0% | 64.7% |
| 4634689 | 4100.1.1.0 ↗ | a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like | 0.70 | 57.0 | 5.20e-01 | 100.0% | 69.2% |
| 3533688 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 58.0 | 5.11e-01 | 100.0% | 64.0% |
| 3925738 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.68 | 54.0 | 4.25e-01 | 96.0% | 40.9% |
| 3428036 | 213.1.1.73 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › IDM1_C | 0.67 | 41.0 | 2.64e-01 | 100.0% | 12.9% |
| 5039156 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.65 | 55.0 | 3.46e-01 | 100.0% | 17.2% |
| 134360 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.64 | 50.0 | 4.77e-01 | 100.0% | 73.4% |
| 3596303 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.64 | 52.0 | 4.71e-01 | 98.0% | 88.0% |
| 4030804 | 2004.1.1.159 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M | 0.64 | 53.0 | 3.36e-01 | 100.0% | 24.8% |
| 3999013 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 46.0 | 2.73e-01 | 82.0% | 26.8% |
| 4378815 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.61 | 50.0 | 4.22e-01 | 100.0% | 60.0% |
| 4928056 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 45.0 | 4.58e-01 | 96.0% | 90.0% |
| 4023575 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 49.0 | 4.04e-01 | 100.0% | 63.2% |
| 4655659 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 41.0 | 2.64e-01 | 80.0% | 63.3% |
| 5041793 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.56 | 43.0 | 3.51e-01 | 82.0% | 65.6% |
| 3601544 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.56 | 47.0 | 2.73e-01 | 100.0% | 58.8% |
| 5048038 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 38.0 | 3.67e-01 | 92.0% | 61.7% |
| 3470611 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.55 | 47.0 | 2.88e-01 | 98.0% | 67.3% |
| 3932457 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.55 | 46.0 | 2.93e-01 | 98.0% | 75.5% |
| 3403644 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.55 | 45.0 | 2.97e-01 | 100.0% | 34.5% |
| 3291448 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.21e-01 | 90.0% | 43.3% |
| 4076818 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.53 | 36.0 | 3.55e-01 | 76.0% | 91.7% |
| 4975982 | 2492.1.1.2 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB | 0.53 | 37.0 | 2.47e-01 | 74.0% | 24.2% |
| 4057006 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.53 | 38.0 | 3.65e-01 | 78.0% | 89.8% |
| 1943596 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.53 | 39.0 | 3.54e-01 | 82.0% | 73.6% |
| 4937843 | 2005.1.1.7 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d | 0.52 | 43.0 | 2.64e-01 | 100.0% | 23.5% |
| 4593775 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.52 | 38.0 | 3.60e-01 | 82.0% | 82.8% |
| 4037769 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.52 | 37.0 | 3.56e-01 | 78.0% | 88.3% |
| 3250994 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 41.0 | 3.83e-01 | 92.0% | 87.7% |
| 4546214 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.51 | 36.0 | 3.49e-01 | 80.0% | 93.3% |
| 5036173 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.51 | 39.0 | 2.58e-01 | 90.0% | 20.0% |
| 4194370 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.51 | 36.0 | 3.52e-01 | 80.0% | 91.7% |
| 4098753 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.51 | 36.0 | 3.34e-01 | 78.0% | 77.9% |
| 3661299 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.51 | 35.0 | 3.40e-01 | 76.0% | 88.3% |
| 3222225 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 40.0 | 3.76e-01 | 94.0% | 70.8% |
| 4679582 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.50 | 35.0 | 3.46e-01 | 80.0% | 93.2% |
| 4886395 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.50 | 35.0 | 3.25e-01 | 76.0% | 77.9% |
| 4028592 | 4281.1.1.1 ↗ | a+b two layers › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal protein L35p › Ribosomal_L35p | 0.50 | 36.0 | 3.52e-01 | 82.0% | 90.0% |