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PH2015_20_scaffold_1_prodigal-single.1__X__X__00263
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00263
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 7-66
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2opeA00 | 3.30.540.20 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.66 | 39.0 | 3.16e-01 | 100.0% | 29.2% |
| 1k32A03 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.62 | 35.0 | 3.32e-01 | 100.0% | 45.8% |
| 2icwG02 | 1.10.10.530 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › mam-mhc complex, Chain D, Domain 2 | 0.61 | 40.0 | 3.48e-01 | 100.0% | 44.9% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.60 | 39.0 | 3.49e-01 | 100.0% | 44.1% |
| 1g8qA00 | 1.10.1450.10 | Mainly Alpha › Orthogonal Bundle › Cd81 Antigen, Extracellular Domain; Chain: A › Tetraspanin | 0.59 | 46.0 | 4.16e-01 | 90.0% | 97.8% |
| 2p3yA02 | 1.10.3360.10 | Mainly Alpha › Orthogonal Bundle › VPA0735-like fold › VPA0735-like domain | 0.57 | 44.0 | 3.74e-01 | 86.7% | 51.4% |
| 4j8sA00 | 1.25.40.840 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › CCR4-NOT transcription complex subunit 1 TTP binding domain | 0.55 | 42.0 | 3.03e-01 | 83.3% | 77.2% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.55 | 39.0 | 3.21e-01 | 75.0% | 72.6% |
| 4ksaA02 | 1.20.140.90 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Malonyl-CoA decarboxylase, oligemerization domain | 0.52 | 37.0 | 2.91e-01 | 75.0% | 81.0% |
| 4j7rA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 38.0 | 2.30e-01 | 83.3% | 40.3% |
| 2y0nC00 | 1.10.274.30 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › MRG domain | 0.51 | 36.0 | 2.76e-01 | 90.0% | 28.7% |
| 1xqrA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.50 | 39.0 | 2.66e-01 | 91.7% | 63.3% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3539881 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.56 | 40.0 | 3.77e-01 | 75.0% | 78.7% |
| 4992658 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.55 | 41.0 | 3.90e-01 | 83.3% | 70.7% |
| 3310234 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.55 | 37.0 | 3.49e-01 | 71.7% | 61.3% |
| 5072100 | 4163.1.1.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF1 N-terminal domain-like › Sld5 | 0.54 | 34.0 | 2.87e-01 | 100.0% | 33.6% |
| 4017134 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 2.88e-01 | 78.3% | 75.6% |
D2
medium
residues 67-153
Domain cluster:
rep: sw_7_scaffold_1_prodigal-single.1__X__X__00220__D33-108
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ew3A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.64 | 45.0 | 3.71e-01 | 100.0% | 40.3% |
| 2gtlN02 | 2.40.128.620 | Mainly Beta › Beta Barrel › Lipocalin › | 0.63 | 52.0 | 4.17e-01 | 90.8% | 63.5% |
| 2kf2A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.61 | 46.0 | 3.66e-01 | 100.0% | 41.3% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.60 | 44.0 | 4.56e-01 | 100.0% | 82.9% |
| 4m00A01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 44.0 | 3.26e-01 | 80.5% | 69.3% |
| 1lkeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 44.0 | 3.64e-01 | 80.5% | 58.6% |
| 3fehA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 46.0 | 4.16e-01 | 92.0% | 61.3% |
| 4boeA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.58 | 44.0 | 3.70e-01 | 97.7% | 46.8% |
| 5dzeA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 43.0 | 3.30e-01 | 79.3% | 57.8% |
| 2dhkA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.57 | 44.0 | 4.26e-01 | 90.8% | 73.0% |
| 2sliA01 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 43.0 | 3.32e-01 | 79.3% | 66.8% |
| 1bebA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.56 | 46.0 | 3.84e-01 | 90.8% | 64.7% |
| 4chjA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 43.0 | 3.85e-01 | 92.0% | 58.1% |
| 3vfcA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 44.0 | 3.72e-01 | 87.4% | 79.2% |
| 1bqgA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 44.0 | 3.77e-01 | 86.2% | 78.3% |
| 1rvkA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.55 | 43.0 | 3.92e-01 | 83.9% | 99.1% |
| 1xkiA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.96e-01 | 89.7% | 68.8% |
| 1dfvA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 44.0 | 3.60e-01 | 90.8% | 63.0% |
| 3v0aB03 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 41.0 | 3.14e-01 | 79.3% | 52.2% |
| 1q7hA01 | 3.10.450.120 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 | 0.54 | 37.0 | 4.14e-01 | 98.9% | 93.8% |
| 4it1B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 42.0 | 3.57e-01 | 86.2% | 81.0% |
| 3pgbA01 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.54 | 49.0 | 2.99e-01 | 100.0% | 60.3% |
| 4dqaA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 3.06e-01 | 79.3% | 55.0% |
| 3jvaA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 41.0 | 3.80e-01 | 85.1% | 97.4% |
| 3ik4B01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 41.0 | 3.80e-01 | 86.2% | 94.1% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.53 | 39.0 | 3.53e-01 | 79.3% | 94.3% |
| 4msxA02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 38.0 | 2.61e-01 | 79.3% | 93.4% |
| 1rfmA02 | 3.30.1370.60 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain | 0.51 | 34.0 | 2.64e-01 | 70.1% | 65.4% |
| 2ekhA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 32.0 | 3.32e-01 | 80.5% | 68.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3709124 | 5.1.5.68 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › RAB3GAP2_N | 0.63 | 54.0 | 3.34e-01 | 93.1% | 32.0% |
| 3561808 | 10.1.1.9 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › SPRY,PRY | 0.61 | 46.0 | 3.55e-01 | 79.3% | 56.8% |
| 3500359 | 9.1.1.45 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › FBO_C | 0.58 | 44.0 | 3.55e-01 | 80.5% | 92.9% |
| 3401352 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.58 | 52.0 | 4.63e-01 | 97.7% | 80.0% |
| 3821015 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.58 | 42.0 | 3.55e-01 | 78.2% | 84.5% |
| 3186184 | 270.1.1.0 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related | 0.57 | 41.0 | 3.40e-01 | 75.9% | 62.5% |
| 3266903 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 43.0 | 4.00e-01 | 81.6% | 74.5% |
| 4082272 | 814.1.1.3 ↗ | a+b two layers › Chorismate lyase › Chorismate lyase › Chorismate lyase › UTRA | 0.57 | 43.0 | 3.63e-01 | 85.1% | 95.1% |
| 3791091 | 5.1.4.73 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N | 0.57 | 48.0 | 3.02e-01 | 93.1% | 25.8% |
| 3412870 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 37.0 | 3.97e-01 | 79.3% | 80.0% |
| 1174546 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.56 | 45.0 | 3.84e-01 | 87.4% | 88.6% |
| 3698484 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.55 | 45.0 | 3.79e-01 | 92.0% | 71.6% |
| 4488000 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 46.0 | 4.17e-01 | 92.0% | 69.6% |
| 3789697 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 44.0 | 4.01e-01 | 92.0% | 77.5% |
| 3491413 | 219.1.1.97 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CEPT76_peptidase | 0.53 | 44.0 | 3.20e-01 | 92.0% | 35.7% |
| 3243417 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 44.0 | 3.88e-01 | 92.0% | 70.8% |
| 3397439 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.53 | 43.0 | 3.91e-01 | 92.0% | 73.6% |
| 3166921 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.53 | 39.0 | 2.66e-01 | 79.3% | 82.3% |
| 3634041 | 7579.1.1.44 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_6 | 0.53 | 47.0 | 3.04e-01 | 100.0% | 44.8% |
| 3884136 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.52 | 43.0 | 3.79e-01 | 92.0% | 63.0% |
| 5005630 | 218.1.1.0 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like | 0.52 | 40.0 | 3.90e-01 | 85.1% | 100.0% |
| 4927397 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.52 | 42.0 | 3.53e-01 | 92.0% | 60.6% |
| 4975442 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.52 | 43.0 | 3.04e-01 | 93.1% | 36.8% |
| 3503728 | 5.1.10.5 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RAB3GAP2_N | 0.51 | 46.0 | 3.90e-01 | 100.0% | 71.0% |
| 3991351 | 220.1.1.4 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 | 0.51 | 42.0 | 3.63e-01 | 92.0% | 55.2% |
| 3637197 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.51 | 46.0 | 3.97e-01 | 100.0% | 67.4% |
| 3592744 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.51 | 43.0 | 3.79e-01 | 92.0% | 92.8% |
| 5045830 | 243.6.1.9 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 | 0.50 | 33.0 | 3.65e-01 | 96.6% | 82.9% |