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PH2015_20_scaffold_1_prodigal-single.1__X__X__00303
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00303
Identity
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-62
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2oarB00 | 1.10.1200.120 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 | 0.78 | 52.0 | 3.99e-01 | 95.1% | 33.6% |
| 3t7zA00 | 3.30.420.220 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.74 | 44.0 | 3.51e-01 | 90.2% | 30.3% |
| 2kvtA00 | 3.30.730.30 | Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein | 0.72 | 52.0 | 4.92e-01 | 75.4% | 74.6% |
| 3u2rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 54.0 | 4.11e-01 | 80.3% | 68.9% |
| 5xpyA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.68 | 50.0 | 4.11e-01 | 86.9% | 44.4% |
| 2ethA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 46.0 | 3.52e-01 | 73.8% | 62.4% |
| 2e8eA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.65 | 51.0 | 4.03e-01 | 91.8% | 40.9% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 49.0 | 3.98e-01 | 82.0% | 44.3% |
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 42.0 | 4.28e-01 | 75.4% | 80.7% |
| 8agaA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.21e-01 | 70.5% | 62.7% |
| 3fogA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.58 | 47.0 | 3.91e-01 | 86.9% | 78.4% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.04e-01 | 72.1% | 38.7% |
| 1wv8A00 | 3.30.2390.10 | Alpha Beta › 2-Layer Sandwich › TTHA1013/TTHA0281-like › TTHA1013-like | 0.57 | 40.0 | 3.83e-01 | 75.4% | 63.4% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 4.02e-01 | 93.4% | 85.4% |
| 1u2kA02 | 1.10.420.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 | 0.56 | 41.0 | 3.29e-01 | 78.7% | 39.1% |
| 1l0qA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 38.0 | 2.46e-01 | 70.5% | 99.0% |
| 2hc5A01 | 3.30.160.170 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like | 0.56 | 39.0 | 3.45e-01 | 77.0% | 46.9% |
| 2qnkA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 41.0 | 2.71e-01 | 86.9% | 46.9% |
| 7dvrA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.44e-01 | 93.4% | 62.4% |
| 3k5bA02 | 3.30.2320.30 | Alpha Beta › 2-Layer Sandwich › hypothetical protein PF0899 fold › ATP synthase, E subunit, C-terminal | 0.53 | 38.0 | 3.50e-01 | 82.0% | 77.5% |
| 3hdjA01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 41.0 | 3.10e-01 | 83.6% | 82.1% |
| 5ucoA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.52 | 39.0 | 2.87e-01 | 78.7% | 37.3% |
| 2w5qA01 | 3.30.1120.170 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.52 | 42.0 | 3.66e-01 | 90.2% | 58.1% |
| 6pcoC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 35.0 | 2.78e-01 | 70.5% | 40.2% |
| 3goxA03 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.51 | 36.0 | 3.34e-01 | 75.4% | 71.6% |
| 2fbeA00 | 2.60.120.920 | Mainly Beta › Sandwich › Jelly Rolls › SPRY domain | 0.51 | 31.0 | 2.30e-01 | 82.0% | 18.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3481479 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.72 | 55.0 | 4.06e-01 | 90.2% | 33.3% |
| 4975908 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.70 | 56.0 | 3.76e-01 | 100.0% | 24.1% |
| 3947081 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.68 | 49.0 | 4.89e-01 | 77.0% | 73.4% |
| 3896583 | 109.4.1.198 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 | 0.67 | 48.0 | 3.39e-01 | 82.0% | 26.3% |
| 4001872 | 220.1.1.123 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st | 0.66 | 50.0 | 3.52e-01 | 91.8% | 26.5% |
| 3266245 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.62 | 44.0 | 3.53e-01 | 77.0% | 38.3% |
| 3393555 | 220.1.1.158 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 | 0.61 | 41.0 | 3.19e-01 | 73.8% | 31.9% |
| 4257463 | 4292.1.1.1 ↗ | a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG | 0.59 | 45.0 | 4.25e-01 | 82.0% | 86.7% |
| 4957731 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.59 | 41.0 | 3.05e-01 | 72.1% | 58.0% |
| 3927286 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.59 | 42.0 | 3.98e-01 | 77.0% | 100.0% |
| 3360754 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.56 | 52.0 | 3.83e-01 | 100.0% | 91.0% |
| 4427264 | 5.1.4.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 | 0.55 | 41.0 | 2.47e-01 | 82.0% | 17.4% |
| 2790593 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.53 | 45.0 | 3.40e-01 | 93.4% | 59.9% |
| None | — | 0.51 | 34.0 | 2.37e-01 | 80.3% | 18.7% |