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PH2015_20_scaffold_1_prodigal-single.1__X__X__00326

Bact-Vir

PH2015_20_scaffold_1_prodigal-single.1__X__X__00326

Identity

Kingdom:
phage

Quality

87.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 31-103
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c12A01 2.30.30.910 Mainly Beta › Roll › SH3 type barrels. › 0.76 46.0 5.45e-01 76.7% 88.2%
1m9sA03 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.70 52.0 5.18e-01 78.1% 98.7%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.70 49.0 5.03e-01 74.0% 100.0%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.69 50.0 5.25e-01 76.7% 87.9%
1wgsA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 47.0 3.82e-01 71.2% 43.6%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 50.0 4.97e-01 76.7% 82.9%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 5.16e-01 89.0% 96.5%
3kbgA03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 43.0 4.83e-01 76.7% 87.5%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.65 51.0 4.63e-01 84.9% 96.0%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 45.0 4.96e-01 75.3% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.57e-01 78.1% 76.8%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 48.0 3.79e-01 80.8% 63.4%
4epcA01 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 5.00e-01 89.0% 95.1%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 40.0 4.62e-01 76.7% 98.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 43.0 4.66e-01 83.6% 88.3%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.47e-01 75.3% 77.9%
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.60 45.0 4.55e-01 78.1% 87.3%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.60 33.0 3.65e-01 71.2% 64.4%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.17e-01 82.2% 61.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 3.97e-01 84.9% 63.2%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.59 35.0 3.79e-01 95.9% 69.4%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 46.0 4.81e-01 86.3% 95.4%
1yx3A01 3.30.1420.10 Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain 0.58 32.0 3.91e-01 95.9% 95.1%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 43.0 3.00e-01 79.5% 56.7%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.31e-01 89.0% 84.8%
1xkgA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 48.0 3.32e-01 100.0% 70.5%
3ed4A02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 46.0 4.51e-01 100.0% 79.5%
1oe4A00 3.40.470.10 Alpha Beta › 3-Layer(aba) Sandwich › Uracil-DNA Glycosylase, subunit E › Uracil-DNA glycosylase-like domain 0.57 47.0 3.26e-01 90.4% 67.8%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.04e-01 83.6% 87.5%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 42.0 2.74e-01 79.5% 81.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.56 37.0 3.53e-01 74.0% 56.3%
7jw2A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 39.0 2.94e-01 75.3% 49.5%
1gv4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.09e-01 76.7% 78.3%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.56 42.0 3.59e-01 80.8% 78.6%
3kkjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 3.23e-01 78.1% 51.6%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 41.0 3.04e-01 79.5% 69.5%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 40.0 3.16e-01 79.5% 48.2%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.43e-01 76.7% 100.0%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.55 39.0 3.32e-01 75.3% 55.6%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.41e-01 78.1% 95.7%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 2.86e-01 79.5% 60.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.54 47.0 4.16e-01 100.0% 82.1%
1xdiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 40.0 3.40e-01 78.1% 97.5%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 45.0 4.41e-01 98.6% 88.5%
1sg5A01 2.30.30.400 Mainly Beta › Roll › SH3 type barrels. › Rof-like 0.52 42.0 4.16e-01 89.0% 94.8%
2r9zA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.44e-01 83.6% 96.6%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 46.0 4.33e-01 98.6% 89.7%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 3.15e-01 82.2% 81.5%
3teeA02 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.71e-01 87.7% 76.7%
3fm8D03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 38.0 3.44e-01 84.9% 86.1%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.79 48.0 5.40e-01 74.0% 80.0%
3989970 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 51.0 5.39e-01 71.2% 100.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.74 46.0 4.27e-01 74.0% 51.1%
4481026 4.1.1.407 ↗ beta barrels › SH3 › SH3 › SH3 › PF29661 0.72 53.0 5.75e-01 84.9% 93.3%
3837995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.14e-01 75.3% 89.1%
3700745 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 46.0 5.42e-01 76.7% 100.0%
3299797 4.1.1.306 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.70 45.0 4.98e-01 71.2% 81.7%
3277860 4.1.1.368 ↗ beta barrels › SH3 › SH3 › SH3 › DUF3097_N 0.69 47.0 4.97e-01 71.2% 87.7%
3326980 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 43.0 4.71e-01 71.2% 78.3%
3617741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 52.0 3.71e-01 80.8% 54.6%
3344303 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.67 47.0 4.25e-01 74.0% 79.0%
3817476 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.67 42.0 4.94e-01 71.2% 94.0%
4032017 2004.1.1.301 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_27 0.66 55.0 3.24e-01 100.0% 11.1%
5032809 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 47.0 3.87e-01 75.3% 43.1%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.92e-01 86.3% 94.5%
3037102 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 43.0 4.68e-01 75.3% 80.6%
5068098 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 51.0 3.86e-01 84.9% 59.4%
4069543 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.65 49.0 4.92e-01 80.8% 78.7%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 41.0 4.55e-01 74.0% 85.5%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.62e-01 76.7% 74.7%
140210 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.57e-01 78.1% 76.8%
1884741 4.1.1.130 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_19 0.63 42.0 4.59e-01 78.1% 84.7%
3740208 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 48.0 5.04e-01 80.8% 90.8%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.63 45.0 3.93e-01 75.3% 50.9%
5043979 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 4.71e-01 76.7% 90.0%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.62 43.0 4.61e-01 71.2% 98.3%
3368254 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.62 44.0 4.83e-01 90.4% 100.0%
4956630 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.62 47.0 3.65e-01 80.8% 39.4%
5066224 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 45.0 4.22e-01 78.1% 62.2%
3947700 4.8.1.25 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DSRB 0.61 44.0 4.67e-01 75.3% 96.8%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.61 46.0 5.04e-01 84.9% 100.0%
3855038 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.61 47.0 3.66e-01 83.6% 38.7%
3981710 2004.1.1.417 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.61 45.0 3.17e-01 91.8% 24.1%
3737903 4.1.1.286 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7072 0.60 40.0 4.39e-01 72.6% 89.1%
4995677 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.59e-01 95.9% 94.5%
3649741 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.60 39.0 3.90e-01 78.1% 64.0%
4565837 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.60 43.0 4.02e-01 76.7% 58.9%
3363360 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.60 41.0 3.99e-01 90.4% 62.4%
4157193 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.59e-01 90.4% 84.3%
3834303 109.4.1.257 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PDS5 0.59 42.0 2.60e-01 90.4% 12.1%
4093911 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 45.0 4.49e-01 84.9% 80.0%
4226849 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 43.0 4.24e-01 90.4% 73.8%
154312 4.1.1.65 ↗ beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.58 46.0 4.74e-01 84.9% 88.6%
3903213 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 38.0 2.92e-01 74.0% 28.0%
3342430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.46e-01 97.3% 82.7%
1145920 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 38.0 3.72e-01 76.7% 60.2%
5040288 7569.1.1.1 ↗ a/b three-layered sandwiches › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › Uracil-DNA glycosylase-like › UDG 0.58 47.0 3.32e-01 90.4% 70.0%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.57 39.0 3.79e-01 76.7% 61.2%
5033600 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 35.0 3.94e-01 71.2% 87.8%
3929373 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.57 41.0 4.37e-01 79.5% 93.3%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.57 41.0 4.24e-01 82.2% 81.4%
3839042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 33.0 3.83e-01 75.3% 91.1%
3638174 4.1.1.320 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_CYT4 0.55 40.0 3.73e-01 90.4% 60.0%
3947013 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 44.0 4.11e-01 100.0% 72.2%
3951630 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.54 39.0 3.15e-01 78.1% 79.3%
3915732 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.53 43.0 4.15e-01 100.0% 80.0%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.53 42.0 4.18e-01 100.0% 88.0%
4469793 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.52 38.0 3.79e-01 79.5% 74.7%
4316816 2003.1.2.25 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 39.0 3.11e-01 82.2% 81.3%
4147655 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.51 36.0 3.33e-01 95.9% 55.0%
4655639 2003.1.2.58 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, Pyr_redox_2 0.51 40.0 2.61e-01 86.3% 34.5%
4000029 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.51 40.0 2.63e-01 86.3% 90.8%