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PH2015_20_scaffold_1_prodigal-single.1__X__X__00338
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00338
Identity
- Kingdom:
- phage
Quality
86.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 37-85
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1twfI01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.73 | 50.0 | 5.19e-01 | 100.0% | 78.3% |
| 1jj2Y00 | 2.20.25.30 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.70 | 43.0 | 3.81e-01 | 81.6% | 41.1% |
| 6gmhI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.69 | 52.0 | 4.66e-01 | 81.6% | 60.9% |
| 1twfI02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.67 | 50.0 | 4.36e-01 | 81.6% | 52.6% |
| 3po3S02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.65 | 49.0 | 4.28e-01 | 81.6% | 54.1% |
| 3os7A00 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 45.0 | 2.81e-01 | 100.0% | 61.1% |
| 2asbA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 37.0 | 3.31e-01 | 71.4% | 52.0% |
| 4e2xA01 | 6.20.50.110 | Special › Other non-globular › N-terminal domain of TfIIb › Methyltransferase, zinc-binding domain | 0.54 | 40.0 | 3.98e-01 | 81.6% | 100.0% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 41.0 | 2.67e-01 | 100.0% | 96.1% |
| 2qkdA01 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.53 | 40.0 | 4.03e-01 | 81.6% | 85.4% |
| 1adjB02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.51 | 40.0 | 3.18e-01 | 83.7% | 57.4% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046714 | 375.8.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc-binding domain of translation initiation factor 2 beta › Zinc-binding domain of translation initiation factor 2 beta | 0.76 | 54.0 | 5.85e-01 | 81.6% | 95.0% |
| 3948622 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 57.0 | 5.96e-01 | 81.6% | 88.9% |
| 5038934 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 55.0 | 5.15e-01 | 81.6% | 69.0% |
| 4485357 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 54.0 | 4.94e-01 | 81.6% | 63.5% |
| 5048721 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 54.0 | 4.91e-01 | 81.6% | 61.5% |
| 3487047 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 54.0 | 5.04e-01 | 81.6% | 70.0% |
| 4028184 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.71 | 53.0 | 4.74e-01 | 81.6% | 61.4% |
| 4937130 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.70 | 54.0 | 4.86e-01 | 81.6% | 61.5% |
| 5054449 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.70 | 53.0 | 4.74e-01 | 81.6% | 58.0% |
| 4963635 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.69 | 53.0 | 4.67e-01 | 81.6% | 58.0% |
| 4941624 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 51.0 | 5.14e-01 | 81.6% | 90.0% |
| 5031239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 53.0 | 4.96e-01 | 83.7% | 95.0% |
| 3713467 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 51.0 | 4.58e-01 | 81.6% | 60.0% |
| 5029813 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 51.0 | 4.99e-01 | 83.7% | 74.5% |
| 345409 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.67 | 51.0 | 4.44e-01 | 81.6% | 54.8% |
| 3445009 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.67 | 51.0 | 3.40e-01 | 81.6% | 22.3% |
| 3204334 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.67 | 51.0 | 5.11e-01 | 95.9% | 82.0% |
| 4959133 | 2007.1.14.19 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Mut7-C | 0.67 | 53.0 | 3.75e-01 | 89.8% | 80.0% |
| 3309343 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.67 | 51.0 | 4.88e-01 | 81.6% | 72.7% |
| 2800345 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.66 | 50.0 | 4.64e-01 | 81.6% | 64.5% |
| 3199611 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.66 | 50.0 | 4.56e-01 | 81.6% | 62.5% |
| 3816604 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.66 | 50.0 | 4.54e-01 | 81.6% | 61.5% |
| 3804890 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.66 | 50.0 | 4.70e-01 | 81.6% | 67.8% |
| 3720866 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 50.0 | 4.59e-01 | 93.9% | 63.1% |
| 4795746 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 55.0 | 3.91e-01 | 98.0% | 66.0% |
| 4013714 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 49.0 | 4.95e-01 | 81.6% | 83.3% |
| 3737071 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.65 | 49.0 | 4.61e-01 | 81.6% | 67.8% |
| 4954491 | 375.1.1.135 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Lar_restr_allev | 0.64 | 51.0 | 4.91e-01 | 89.8% | 76.4% |
| 5046640 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 55.0 | 5.36e-01 | 100.0% | 96.4% |
| 3704822 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 48.0 | 3.28e-01 | 81.6% | 24.5% |
| 4664970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 47.0 | 4.89e-01 | 79.6% | 86.7% |
| 4680459 | 375.1.1.67 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N | 0.63 | 46.0 | 4.81e-01 | 79.6% | 86.7% |
| 3908665 | 4.1.1.227 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP_KDM3B | 0.62 | 47.0 | 3.78e-01 | 81.6% | 51.6% |
| 4943339 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 49.0 | 4.04e-01 | 95.9% | 46.0% |
| 3945357 | 375.1.1.234 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_PaaD | 0.62 | 45.0 | 4.80e-01 | 98.0% | 97.5% |
| 2796001 | 375.1.1.7 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C | 0.60 | 43.0 | 3.98e-01 | 77.6% | 64.6% |
| 3285355 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 40.0 | 3.72e-01 | 85.7% | 98.6% |