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PH2015_20_scaffold_1_prodigal-single.1__X__X__00361

Bact-Vir

PH2015_20_scaffold_1_prodigal-single.1__X__X__00361

Identity

Kingdom:
phage

Quality

76.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-72
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.76 57.0 4.59e-01 78.9% 71.3%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.73 62.0 5.40e-01 91.5% 66.7%
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.71 60.0 5.16e-01 91.5% 65.1%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.67 49.0 4.34e-01 77.5% 58.6%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.65 56.0 4.99e-01 100.0% 71.0%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.63 43.0 4.04e-01 90.1% 58.0%
3ak5D02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.62 52.0 2.97e-01 91.5% 14.9%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 55.0 4.59e-01 100.0% 82.3%
6v55A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 48.0 3.41e-01 83.1% 62.1%
2vszB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 53.0 4.50e-01 98.6% 97.4%
6grrB01 3.30.457.10 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Copper amine oxidase-like, N-terminal domain 0.60 43.0 4.18e-01 74.6% 86.1%
1ulvA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 44.0 2.92e-01 77.5% 65.8%
2hzmA02 2.20.140.20 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › 0.60 53.0 5.03e-01 100.0% 97.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 53.0 4.40e-01 98.6% 71.8%
3igfA02 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 4.28e-01 87.3% 73.0%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 45.0 4.01e-01 84.5% 95.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.58 35.0 2.69e-01 100.0% 26.4%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 46.0 3.41e-01 84.5% 68.6%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 40.0 4.29e-01 71.8% 88.7%
2fbeA00 2.60.120.920 Mainly Beta › Sandwich › Jelly Rolls › SPRY domain 0.57 47.0 3.42e-01 88.7% 62.2%
4cciA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 53.0 3.51e-01 100.0% 75.7%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 49.0 3.22e-01 98.6% 27.9%
2vseA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 45.0 3.64e-01 88.7% 97.9%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 49.0 3.11e-01 98.6% 25.9%
2fn0B00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.56 47.0 2.95e-01 97.2% 21.4%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.44e-01 100.0% 95.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.56 38.0 3.29e-01 71.8% 52.5%
2bzyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 29.0 3.11e-01 70.4% 51.6%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 39.0 2.79e-01 71.8% 62.1%
8adlB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 49.0 3.16e-01 100.0% 22.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.55 47.0 3.85e-01 100.0% 75.9%
1dbzA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 47.0 3.43e-01 97.2% 35.9%
2fe0A01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.55e-01 78.9% 86.0%
4m00A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 49.0 3.39e-01 100.0% 77.7%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 45.0 3.05e-01 88.7% 96.2%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 44.0 3.54e-01 100.0% 87.8%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 42.0 2.87e-01 100.0% 21.3%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 36.0 3.65e-01 71.8% 85.9%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 44.0 3.44e-01 100.0% 65.5%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.52 41.0 3.13e-01 88.7% 66.7%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.52 45.0 3.05e-01 100.0% 44.1%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 3.97e-01 100.0% 97.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.87e-01 88.7% 97.9%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.21e-01 94.4% 71.9%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.99e-01 100.0% 90.7%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 42.0 2.83e-01 98.6% 85.9%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3925754 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.73 54.0 4.38e-01 100.0% 41.5%
4975637 241.2.1.0 a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.71 48.0 4.64e-01 80.3% 62.5%
3416385 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.70 47.0 3.42e-01 94.4% 25.1%
3734321 844.1.1.3 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF6593 0.66 58.0 4.41e-01 100.0% 74.3%
3937635 3257.1.1.1 a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.64 43.0 3.19e-01 94.4% 25.8%
4202176 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.64 55.0 4.12e-01 100.0% 52.1%
4001872 220.1.1.123 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_SSH1-like_1st 0.63 53.0 4.07e-01 100.0% 57.3%
4241220 5.1.3.48 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Gmad1 0.63 49.0 3.21e-01 100.0% 21.5%
5013176 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.63 53.0 5.26e-01 94.4% 90.7%
3233815 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.63 48.0 3.22e-01 81.7% 40.2%
4928066 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 48.0 3.63e-01 84.5% 78.7%
4026536 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.62 56.0 4.64e-01 100.0% 79.8%
3870514 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.62 54.0 4.67e-01 100.0% 71.3%
3976843 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.61 53.0 4.98e-01 98.6% 87.6%
3389062 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 54.0 4.76e-01 100.0% 91.4%
4589583 2008.1.1.191 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_HpaII 0.60 54.0 4.02e-01 98.6% 72.8%
5003963 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.60 46.0 2.87e-01 83.1% 24.3%
3245311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 48.0 4.24e-01 87.3% 97.1%
5044090 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.60 36.0 2.75e-01 71.8% 26.2%
1283866 220.1.1.51 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP3_C 0.60 53.0 4.40e-01 98.6% 71.8%
3567079 5.1.2.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › WD40 0.60 48.0 3.38e-01 100.0% 29.8%
3486370 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.27e-01 98.6% 19.2%
4301426 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 46.0 3.39e-01 84.5% 64.9%
4023915 220.1.1.53 beta barrels › PH domain-like › PH domain-like › PH domain-like › ISP1_C 0.59 53.0 4.48e-01 100.0% 88.7%
3723092 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.59 51.0 4.37e-01 100.0% 85.8%
3586488 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.58 44.0 2.84e-01 100.0% 16.1%
3287961 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.58 49.0 3.44e-01 100.0% 91.3%
3247178 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.58 38.0 3.66e-01 98.6% 58.7%
3028388 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.58 43.0 4.29e-01 88.7% 76.4%
3693093 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 51.0 4.26e-01 100.0% 83.2%
3292855 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.58 51.0 4.26e-01 100.0% 76.0%
3235531 207.1.1.52 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.58 46.0 3.22e-01 88.7% 47.5%
3643227 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 50.0 3.97e-01 100.0% 64.7%
3713750 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 48.0 3.65e-01 90.1% 74.4%
26896 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.57 37.0 3.53e-01 98.6% 55.8%
3789432 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.88e-01 93.0% 22.7%
3271978 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.57 41.0 2.69e-01 100.0% 16.9%
3923930 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.57 50.0 4.36e-01 100.0% 78.2%
3928361 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.57 49.0 4.01e-01 100.0% 83.6%
3377025 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 49.0 3.20e-01 100.0% 90.9%
4934826 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 43.0 2.88e-01 100.0% 20.0%
3226400 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.56 37.0 3.46e-01 98.6% 53.3%
4029057 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.32e-01 100.0% 95.2%
3625619 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 49.0 3.61e-01 94.4% 72.0%
4000914 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 40.0 2.72e-01 100.0% 19.0%
3890410 11.2.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › DUF4550 0.55 48.0 3.74e-01 97.2% 78.1%
3792816 220.1.1.33 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_8 0.55 49.0 4.14e-01 100.0% 71.7%
3785778 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.55 41.0 2.66e-01 100.0% 16.8%
3789912 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.55 37.0 3.47e-01 98.6% 56.5%
3753034 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 46.0 2.90e-01 100.0% 16.8%
3740081 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.55 44.0 3.93e-01 93.0% 90.0%
5059595 213.1.1.21 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C 0.54 39.0 3.19e-01 76.1% 87.7%
3320676 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.54 45.0 2.84e-01 100.0% 17.2%
3562264 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.54 46.0 2.96e-01 100.0% 76.6%
3653490 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 46.0 3.06e-01 98.6% 24.1%
3231483 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.43e-01 100.0% 53.5%
3832604 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 44.0 2.61e-01 98.6% 49.3%
3706087 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 37.0 3.95e-01 87.3% 90.0%
3515019 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.52 44.0 3.00e-01 98.6% 83.6%
3621466 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 39.0 2.52e-01 84.5% 94.1%
4031216 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.51 42.0 2.91e-01 91.5% 78.8%
3215907 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 45.0 3.05e-01 98.6% 32.6%
3509390 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 46.0 3.85e-01 100.0% 78.3%
4024720 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 3.26e-01 98.6% 72.6%
3715024 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.50 42.0 3.92e-01 95.8% 94.4%