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PH2015_20_scaffold_1_prodigal-single.1__X__X__00379
Bact-VirPH2015_20_scaffold_1_prodigal-single.1__X__X__00379
Identity
- Kingdom:
- phage
Quality
87.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.79 | 55.0 | 4.55e-01 | 73.6% | 49.5% |
| 5hwoA00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.79 | 57.0 | 3.33e-01 | 77.4% | 61.0% |
| 4rz7A02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.78 | 58.0 | 4.32e-01 | 77.4% | 89.3% |
| 3tl4X02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.77 | 52.0 | 4.70e-01 | 71.7% | 51.4% |
| 2eh3A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.76 | 51.0 | 3.80e-01 | 77.4% | 30.3% |
| 4f7nB01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.74 | 64.0 | 4.75e-01 | 98.1% | 54.4% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.73 | 64.0 | 5.64e-01 | 100.0% | 68.4% |
| 2h09A02 | 1.10.60.10 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Iron dependent repressor, metal binding and dimerisation domain | 0.73 | 51.0 | 5.08e-01 | 77.4% | 69.6% |
| 1cf7B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 50.0 | 4.32e-01 | 71.7% | 46.3% |
| 4cc9B00 | 1.20.5.4730 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.73 | 63.0 | 5.19e-01 | 100.0% | 59.2% |
| 1jkwA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.72 | 61.0 | 5.03e-01 | 98.1% | 59.4% |
| 3keyA01 | 1.10.10.1080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain | 0.70 | 55.0 | 4.70e-01 | 88.7% | 52.9% |
| 5xs2B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.68 | 54.0 | 4.14e-01 | 92.5% | 38.6% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.68 | 48.0 | 3.85e-01 | 77.4% | 64.3% |
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.66 | 56.0 | 4.83e-01 | 98.1% | 94.3% |
| 6z4xA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.66 | 54.0 | 4.00e-01 | 98.1% | 34.8% |
| 3j27B00 | 1.10.8.970 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Flavivirus envelope glycoprotein M-like | 0.63 | 47.0 | 4.35e-01 | 84.9% | 61.1% |
| 2m7bA00 | 1.10.10.1920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.62 | 42.0 | 3.87e-01 | 73.6% | 50.6% |
| 3pr6A00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 49.0 | 3.73e-01 | 98.1% | 84.1% |
| 1t16A00 | 2.40.160.60 | Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) | 0.59 | 42.0 | 2.51e-01 | 77.4% | 33.3% |
| 1ax4A02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.58 | 48.0 | 3.10e-01 | 94.3% | 66.8% |
| 2x49A03 | 1.10.8.540 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › FHIPEP family, domain 3 | 0.57 | 45.0 | 3.99e-01 | 100.0% | 57.8% |
| 4jndA01 | 1.10.1740.220 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.57 | 43.0 | 3.45e-01 | 92.5% | 54.6% |
| 4rk2A00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.55 | 46.0 | 2.83e-01 | 100.0% | 55.5% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.55 | 37.0 | 3.49e-01 | 77.4% | 54.9% |
| 2xokP00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.54 | 38.0 | 3.45e-01 | 73.6% | 70.3% |
| 2da4A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 37.0 | 3.53e-01 | 73.6% | 72.7% |
| 1pyvA00 | 1.10.10.910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP synthase, F1 beta subunit | 0.53 | 38.0 | 3.87e-01 | 83.0% | 81.1% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.54e-01 | 73.6% | 66.7% |
| 1x0tA01 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.53 | 37.0 | 3.54e-01 | 71.7% | 65.6% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 37.0 | 3.02e-01 | 86.8% | 81.4% |
| 2ahrA02 | 1.10.3730.10 | Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › ProC C-terminal domain-like | 0.51 | 34.0 | 2.88e-01 | 71.7% | 98.1% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3166992 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.94 | 65.0 | 5.64e-01 | 71.7% | 50.7% |
| 3278820 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.93 | 67.0 | 4.99e-01 | 75.5% | 35.8% |
| 5005349 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.91 | 67.0 | 3.78e-01 | 77.4% | 12.0% |
| 4964111 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.90 | 63.0 | 4.91e-01 | 73.6% | 38.1% |
| 4635599 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.86 | 60.0 | 4.39e-01 | 73.6% | 30.4% |
| 3961309 | 191.1.1.48 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_46 | 0.85 | 62.0 | 4.61e-01 | 77.4% | 33.6% |
| 4488970 | 148.1.3.328 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › InvH | 0.82 | 72.0 | 6.69e-01 | 96.2% | 81.5% |
| 3172204 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.81 | 72.0 | 5.33e-01 | 98.1% | 41.5% |
| 3707503 | 101.1.10.20 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB_C_2 | 0.81 | 74.0 | 5.45e-01 | 98.1% | 44.8% |
| 3599628 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.79 | 58.0 | 4.06e-01 | 77.4% | 74.8% |
| 3742618 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.78 | 66.0 | 5.20e-01 | 94.3% | 49.1% |
| 3880756 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.78 | 53.0 | 3.74e-01 | 71.7% | 67.3% |
| 3507767 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.77 | 68.0 | 5.56e-01 | 98.1% | 58.9% |
| 3676359 | 563.1.1.0 ↗ | alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.77 | 58.0 | 4.67e-01 | 81.1% | 83.0% |
| 4198250 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.76 | 64.0 | 5.82e-01 | 92.5% | 80.0% |
| 3739098 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.76 | 54.0 | 4.04e-01 | 75.5% | 31.5% |
| 3402150 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.74 | 63.0 | 4.76e-01 | 98.1% | 41.5% |
| 3635697 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.73 | 62.0 | 5.21e-01 | 98.1% | 58.9% |
| 4283877 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.73 | 54.0 | 3.83e-01 | 79.2% | 28.1% |
| 1124196 | 3788.1.1.1 ↗ | alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR | 0.73 | 63.0 | 5.19e-01 | 100.0% | 59.2% |
| 3960471 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.70 | 48.0 | 4.41e-01 | 73.6% | 54.8% |
| 3816176 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.70 | 49.0 | 3.96e-01 | 75.5% | 65.7% |
| 3723653 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.68 | 56.0 | 4.20e-01 | 100.0% | 86.0% |
| 4318285 | 1023.1.1.1 ↗ | beta barrels › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › Cell division protein ZapC N-terminal domain › ZapC_N | 0.66 | 52.0 | 4.51e-01 | 88.7% | 75.3% |
| 4343262 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.66 | 54.0 | 5.11e-01 | 92.5% | 78.5% |
| 3998629 | 198.1.1.1 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 | 0.65 | 44.0 | 3.95e-01 | 73.6% | 50.0% |
| 4596455 | 160.1.1.1 ↗ | alpha superhelices › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › C-terminal domain of alpha and beta subunits of F1 ATP synthase › ATP-synt_ab_C | 0.61 | 47.0 | 3.67e-01 | 100.0% | 36.9% |
| 183893 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.60 | 49.0 | 3.75e-01 | 98.1% | 85.3% |
| 3422323 | 3238.1.1.1 ↗ | alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF | 0.57 | 47.0 | 3.11e-01 | 100.0% | 32.7% |
| 3712283 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 40.0 | 2.66e-01 | 73.6% | 37.2% |
| 3995291 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.55 | 46.0 | 4.36e-01 | 98.1% | 78.5% |
| 3173158 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 41.0 | 4.26e-01 | 86.8% | 96.0% |