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PH2015_20_scaffold_1_prodigal-single.1__X__X__00385

Bact-Vir

PH2015_20_scaffold_1_prodigal-single.1__X__X__00385

Identity

Kingdom:
phage

Quality

83.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-122
PDB
Domain cluster: rep: PH2015_20_scaffold_1_prodigal-single.1__X__X__00386__D4-117
D2 high residues 131-282
PDB
Domain cluster: rep: LacPavin_0818_WC55_scaffold_0-10091_curated_closed_complete_start-adj_prodigal-single.1__X__X__00801__D162-274
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.69 39.0 4.46e-01 98.7% 73.9%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 26.0 3.22e-01 99.3% 52.9%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.65 42.0 4.18e-01 100.0% 63.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 37.0 4.55e-01 99.3% 100.0%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.60 33.0 3.77e-01 100.0% 69.8%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 37.0 4.54e-01 99.3% 98.9%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 37.0 4.34e-01 100.0% 88.5%
1s14B00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.60 34.0 3.26e-01 100.0% 46.1%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 32.0 4.00e-01 75.0% 84.8%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 34.0 4.09e-01 75.0% 87.2%
1vajA02 3.30.1490.150 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Hypothetical protein ph0010; domain 2 0.58 30.0 4.03e-01 99.3% 100.0%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 36.0 4.14e-01 94.1% 86.5%
3cbnA00 2.60.120.630 Mainly Beta › Sandwich › Jelly Rolls › mth639 domain like 0.57 48.0 4.92e-01 100.0% 94.4%
1aj6A00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.53 32.0 3.02e-01 100.0% 46.9%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.50e-01 90.8% 70.2%
1vq8B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 37.0 3.88e-01 99.3% 83.2%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3210962 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 43.0 5.19e-01 100.0% 97.9%
3227251 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 44.0 4.95e-01 99.3% 85.2%
3964292 1.1.13.38 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 0.67 35.0 4.04e-01 100.0% 68.2%
3237729 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 40.0 4.74e-01 98.7% 86.7%
5034335 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.65 27.0 3.56e-01 74.3% 68.2%
3387846 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.65 39.0 4.35e-01 98.7% 74.2%
3970225 1.1.13.68 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27125 0.65 33.0 4.09e-01 87.5% 80.0%
4117582 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.64 40.0 4.33e-01 100.0% 73.6%
4026425 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.64 41.0 4.20e-01 100.0% 66.9%
3929255 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.64 41.0 4.23e-01 100.0% 67.6%
3187986 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.61 34.0 3.93e-01 73.7% 75.2%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.60 38.0 4.18e-01 99.3% 78.3%
3970513 1.1.7.87 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 0.60 35.0 4.34e-01 98.7% 100.0%
3215466 11.2.1.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.56 28.0 3.15e-01 75.0% 59.1%
3702149 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 45.0 4.48e-01 99.3% 81.2%
3535347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 39.0 4.41e-01 99.3% 100.0%
3286458 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.52 39.0 4.27e-01 100.0% 96.0%
5002750 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 32.0 3.76e-01 85.5% 89.5%
3544717 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.50 31.0 3.16e-01 100.0% 62.1%