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PH2015_20_scaffold_1_prodigal-single.1__X__X__00388

Bact-Vir

PH2015_20_scaffold_1_prodigal-single.1__X__X__00388

Identity

Kingdom:
phage

Quality

60.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
D2 high residues 255-328
PDB
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1i1nA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 45.0 3.15e-01 70.3% 21.9%
3bb9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 55.0 4.71e-01 95.9% 93.6%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.65 44.0 3.60e-01 70.3% 74.5%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.77e-01 95.9% 94.0%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.65 54.0 4.11e-01 95.9% 66.5%
3bgaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.65 56.0 3.83e-01 97.3% 39.3%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.65 55.0 5.31e-01 95.9% 81.6%
3ub1D02 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 54.0 4.77e-01 95.9% 81.6%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 55.0 3.71e-01 98.6% 37.9%
3dmcA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 54.0 4.53e-01 97.3% 86.6%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 54.0 4.32e-01 97.3% 98.7%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 53.0 4.70e-01 95.9% 89.0%
1vqqA01 3.10.450.100 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › NTF2-like; domain 1 0.63 53.0 4.74e-01 97.3% 97.2%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 52.0 4.46e-01 95.9% 92.1%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.62 54.0 3.60e-01 98.6% 47.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 4.33e-01 95.9% 83.5%
1wnhA02 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 52.0 4.47e-01 95.9% 63.3%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 50.0 4.31e-01 95.9% 91.5%
2l4vA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 53.0 4.41e-01 100.0% 87.4%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 51.0 4.45e-01 97.3% 96.7%
3n72A00 3.15.10.20 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Activator of Hsp90 ATPase Aha1, N-terminal domain 0.60 47.0 3.91e-01 87.8% 83.9%
3ci0K01 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.60 44.0 3.97e-01 78.4% 90.4%
4b28A02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.60 53.0 3.71e-01 98.6% 86.6%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.60 50.0 4.18e-01 97.3% 51.5%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.23e-01 95.9% 96.0%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 43.0 3.59e-01 77.0% 81.7%
2kxgA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.64e-01 95.9% 76.8%
3w15A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 42.0 2.79e-01 95.9% 17.1%
3q34A00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.59 49.0 3.82e-01 95.9% 94.3%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 50.0 3.79e-01 100.0% 56.3%
4n6tA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.75e-01 94.6% 92.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 42.0 4.32e-01 97.3% 84.5%
4mjdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 4.26e-01 95.9% 91.2%
1f98A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 48.0 4.20e-01 100.0% 88.0%
3b33A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 50.0 4.45e-01 100.0% 84.4%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 47.0 4.26e-01 97.3% 93.6%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.91e-01 97.3% 75.7%
1e25A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 44.0 3.06e-01 89.2% 25.2%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.56 48.0 4.12e-01 94.6% 79.3%
3ub8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 49.0 3.89e-01 100.0% 63.7%
5akpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 46.0 4.01e-01 100.0% 67.4%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 48.0 3.83e-01 97.3% 56.7%
1tuhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.92e-01 98.6% 92.4%
1ex2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.55 43.0 3.33e-01 87.8% 89.2%
3g8zA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.96e-01 98.6% 94.5%
1ulvA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 42.0 4.05e-01 85.1% 80.2%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 47.0 3.15e-01 100.0% 87.3%
1ym5A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.54 47.0 3.76e-01 100.0% 99.4%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 46.0 4.07e-01 100.0% 69.3%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 46.0 3.79e-01 100.0% 68.8%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 36.0 3.53e-01 95.9% 63.9%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 44.0 3.52e-01 98.6% 53.0%
3brnB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 43.0 3.61e-01 98.6% 50.7%
2jzlA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.52 43.0 3.85e-01 94.6% 69.4%
5iroD00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.81e-01 90.5% 76.5%
5vawA01 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.52 41.0 3.63e-01 90.5% 89.7%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.51 43.0 2.96e-01 97.3% 41.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3783275 243.3.1.64 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF29059 0.65 54.0 4.81e-01 94.6% 83.5%
152844 243.3.1.8 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3889 0.65 55.0 5.31e-01 95.9% 81.6%
3217717 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.64 54.0 3.42e-01 95.9% 21.2%
4806775 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.64 54.0 4.74e-01 95.9% 94.8%
3708657 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 56.0 4.63e-01 98.6% 80.0%
4383836 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.64 54.0 3.72e-01 98.6% 37.5%
3865506 4210.1.1.3 a+b two layers › WGR domain › WGR domain › WGR domain › PF26166 0.64 46.0 4.06e-01 86.5% 51.8%
3228525 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.63 54.0 4.83e-01 98.6% 94.5%
1807441 243.1.1.37 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcpC-like_C 0.63 53.0 4.70e-01 95.9% 89.0%
5041727 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.63 44.0 3.45e-01 74.3% 36.9%
3277629 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.62 52.0 4.50e-01 97.3% 98.4%
3714031 5.1.3.66 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Pep3_Vps18 0.62 54.0 4.04e-01 95.9% 50.8%
4662134 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.62 45.0 3.88e-01 75.7% 84.3%
3420340 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.62 54.0 4.33e-01 100.0% 51.6%
3567279 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.62 52.0 4.56e-01 94.6% 65.2%
3808505 243.3.1.1 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.62 52.0 4.98e-01 94.6% 92.9%
349159 913.1.1.1 few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › HRM 0.62 46.0 4.50e-01 97.3% 73.8%
1790173 243.1.1.39 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TraH_VirB8-like 0.62 51.0 4.36e-01 95.9% 93.8%
1388524 243.17.1.1 a+b two layers › Cystatin-like › C-terminal domain of PatG › C-terminal domain of PatG › PatG_C 0.61 52.0 4.44e-01 98.6% 61.5%
4436162 243.1.1.34 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › YchJ_M-like 0.61 52.0 4.45e-01 100.0% 77.7%
3420926 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.36e-01 95.9% 20.3%
4582733 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.61 51.0 4.35e-01 98.6% 80.0%
5006627 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.61 53.0 4.53e-01 100.0% 97.6%
3272624 4210.1.1.1 a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.61 47.0 4.02e-01 87.8% 57.7%
3454914 243.3.1.12 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › SQAPI 0.60 50.0 4.62e-01 94.6% 73.0%
4980169 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.60 47.0 3.10e-01 86.5% 43.6%
3967620 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 50.0 4.26e-01 97.3% 84.4%
3882544 243.3.1.4 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Latexin_N 0.60 50.0 4.32e-01 94.6% 63.3%
4944869 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 46.0 3.95e-01 86.5% 60.8%
4561192 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 49.0 4.89e-01 97.3% 96.2%
3236485 389.1.1.93 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Ephrin_CRD 0.60 44.0 4.62e-01 95.9% 90.8%
2722108 243.1.1.67 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.60 50.0 4.37e-01 98.6% 93.5%
3597976 2484.8.1.0 mixed a+b and a/b › Ribonuclease H-like › Separase pseudo-protease domain (PPD) › Separase pseudo-protease domain (PPD) 0.60 49.0 3.49e-01 89.2% 43.7%
4945458 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 4.79e-01 100.0% 77.6%
3808162 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 48.0 4.63e-01 94.6% 78.9%
3214004 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 49.0 4.52e-01 95.9% 92.0%
3966884 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.59 48.0 4.10e-01 94.6% 86.9%
2724186 243.1.1.67 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Cds6_C 0.59 48.0 4.21e-01 95.9% 88.3%
4960252 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 48.0 4.27e-01 97.3% 98.3%
3348808 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.58 45.0 2.84e-01 83.8% 39.0%
4937710 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 49.0 4.33e-01 98.6% 97.4%
3281500 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.58 48.0 4.13e-01 98.6% 92.3%
4319690 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 49.0 4.25e-01 100.0% 90.8%
3852953 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 51.0 3.56e-01 100.0% 95.8%
3511200 389.1.2.0 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.56 46.0 4.42e-01 97.3% 77.6%
3838387 223.1.1.97 a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_2 0.56 49.0 3.70e-01 100.0% 52.6%
3229281 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.56 45.0 4.00e-01 95.9% 92.5%
3854276 1116.1.1.1 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom 0.56 47.0 3.50e-01 100.0% 89.5%
3587589 11.1.4.36 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.56 46.0 4.20e-01 95.9% 97.1%
3273514 243.1.1.36 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_5 0.55 46.0 3.96e-01 98.6% 85.4%
5078225 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.55 38.0 4.04e-01 83.8% 93.1%
3271321 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 44.0 3.81e-01 97.3% 82.2%
5034706 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 38.0 3.81e-01 74.3% 76.0%
4067255 809.1.1.1 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP › SmpA_OmlA 0.54 41.0 3.94e-01 100.0% 71.8%
3630050 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.54 48.0 3.78e-01 100.0% 58.7%
2772183 1116.1.1.1 a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom 0.54 46.0 3.37e-01 100.0% 80.9%
3253090 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 43.0 3.93e-01 95.9% 98.2%
3949003 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.53 47.0 3.47e-01 98.6% 41.5%
3433324 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.52 44.0 2.86e-01 97.3% 19.2%
3255320 4096.1.1.1 a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.51 38.0 2.94e-01 82.4% 35.7%