←Back to structures
PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00010
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00010
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-85
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 53.0 | 4.95e-01 | 74.7% | 57.6% |
| 2pvqA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.77 | 51.0 | 4.67e-01 | 85.5% | 52.8% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.77 | 58.0 | 5.08e-01 | 90.4% | 55.6% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.77 | 50.0 | 4.49e-01 | 85.5% | 49.1% |
| 4od4A02 | 1.20.120.1780 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › UbiA prenyltransferase | 0.76 | 46.0 | 4.02e-01 | 90.4% | 42.0% |
| 3m9vA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.75 | 60.0 | 4.83e-01 | 85.5% | 47.8% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.75 | 47.0 | 4.20e-01 | 92.8% | 45.6% |
| 1rq0A01 | 6.10.140.160 | Special › Helix non-globular › Helix Hairpins › | 0.72 | 60.0 | 6.08e-01 | 90.4% | 91.6% |
| 5k3hB04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.71 | 57.0 | 4.85e-01 | 86.7% | 57.1% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 59.0 | 4.41e-01 | 90.4% | 67.0% |
| 4ex8A00 | 3.40.1790.10 | Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain | 0.70 | 49.0 | 3.32e-01 | 73.5% | 92.7% |
| 3qo8A01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.69 | 58.0 | 5.32e-01 | 90.4% | 82.1% |
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.67 | 48.0 | 3.54e-01 | 75.9% | 29.0% |
| 2b1eA04 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.66 | 46.0 | 3.98e-01 | 79.5% | 46.5% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.64 | 49.0 | 4.40e-01 | 90.4% | 58.5% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 45.0 | 4.29e-01 | 95.2% | 61.2% |
| 2ahmG01 | 6.10.250.2820 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.64 | 48.0 | 4.50e-01 | 78.3% | 69.7% |
| 5fmnA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.63 | 55.0 | 5.52e-01 | 98.8% | 94.2% |
| 4adzA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.63 | 55.0 | 5.40e-01 | 100.0% | 90.0% |
| 2db7A01 | 6.10.250.980 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.62 | 40.0 | 4.53e-01 | 73.5% | 100.0% |
| 5lbmA00 | 1.20.58.1000 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Metal-sensitive repressor, helix protomer | 0.62 | 52.0 | 5.28e-01 | 94.0% | 94.0% |
| 4y9jA01 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.61 | 54.0 | 4.51e-01 | 100.0% | 71.1% |
| 1l3eB00 | 1.20.1020.10 | Mainly Alpha › Up-down Bundle › CREB-binding Protein; Chain A › TAZ domain | 0.61 | 37.0 | 3.54e-01 | 73.5% | 49.5% |
| 1rzhL01 | 1.20.85.10 | Mainly Alpha › Up-down Bundle › Photosynthetic Reaction Center, subunit M; domain 1 › Photosystem II protein D1-like | 0.60 | 55.0 | 4.35e-01 | 100.0% | 55.2% |
| 7egfc01 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 48.0 | 4.80e-01 | 97.6% | 86.0% |
| 4wv4B00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.58 | 47.0 | 4.57e-01 | 95.2% | 77.4% |
| 3bujA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 52.0 | 3.35e-01 | 100.0% | 62.5% |
| 2iw3A02 | 1.20.1390.20 | Mainly Alpha › Up-down Bundle › PWI domain › | 0.56 | 37.0 | 3.62e-01 | 100.0% | 61.1% |
| 6orkA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 44.0 | 3.12e-01 | 85.5% | 57.1% |
| 1a00B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.54 | 44.0 | 3.68e-01 | 100.0% | 51.4% |
| 2p0vA01 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.52 | 49.0 | 3.02e-01 | 100.0% | 48.3% |
| 1q16C01 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.51 | 43.0 | 3.30e-01 | 98.8% | 43.5% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4983663 | 632.11.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like | 0.85 | 54.0 | 5.43e-01 | 85.5% | 64.3% |
| 5023098 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.78 | 63.0 | 5.43e-01 | 85.5% | 56.8% |
| 5018993 | 601.30.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › NOG1_N | 0.78 | 58.0 | 5.00e-01 | 100.0% | 52.0% |
| 3231996 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.76 | 54.0 | 4.79e-01 | 78.3% | 51.7% |
| 4970712 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.73 | 58.0 | 5.37e-01 | 85.5% | 72.4% |
| 3618 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.72 | 60.0 | 6.11e-01 | 90.4% | 92.7% |
| 4002021 | 7111.1.1.1 ↗ | alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap | 0.72 | 57.0 | 4.43e-01 | 91.6% | 41.2% |
| 4029442 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.72 | 62.0 | 4.30e-01 | 94.0% | 31.5% |
| 3789449 | 4006.1.1.0 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain | 0.70 | 60.0 | 5.74e-01 | 91.6% | 82.1% |
| 4002999 | 632.19.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A | 0.70 | 56.0 | 5.16e-01 | 85.5% | 68.6% |
| 3726054 | 633.6.1.8 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACOX_C_alpha1 | 0.70 | 57.0 | 4.31e-01 | 90.4% | 39.0% |
| 3198546 | 4120.1.1.63 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › PF30356 | 0.69 | 58.0 | 4.96e-01 | 92.8% | 63.7% |
| 4095641 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.69 | 59.0 | 5.64e-01 | 92.8% | 85.3% |
| 3828 | 604.6.1.1 ↗ | alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › GAT | 0.68 | 48.0 | 4.29e-01 | 72.3% | 56.2% |
| 3524656 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.68 | 56.0 | 4.94e-01 | 92.8% | 62.4% |
| 4927898 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.68 | 56.0 | 3.61e-01 | 95.2% | 20.0% |
| 3788504 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.67 | 59.0 | 3.59e-01 | 95.2% | 19.0% |
| None | — | 0.67 | 54.0 | 3.67e-01 | 89.2% | 53.3% | |
| 3741785 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.66 | 58.0 | 5.46e-01 | 95.2% | 84.0% |
| 3506288 | 4177.1.1.6 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › BAR_3_WASP_bdg | 0.66 | 53.0 | 3.99e-01 | 89.2% | 66.8% |
| 4612374 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.65 | 56.0 | 5.50e-01 | 94.0% | 92.2% |
| 3969668 | 3758.2.1.1 ↗ | alpha bundles › Bacterial hemolysins-like › Biopolymer transport protein ExbB › Biopolymer transport protein ExbB › MotA_ExbB | 0.65 | 49.0 | 3.61e-01 | 81.9% | 40.4% |
| 4473674 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 52.0 | 4.82e-01 | 89.2% | 69.1% |
| 5008952 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.65 | 55.0 | 3.48e-01 | 95.2% | 19.8% |
| 4647039 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.65 | 55.0 | 3.46e-01 | 95.2% | 19.1% |
| 3436965 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.64 | 53.0 | 5.10e-01 | 92.8% | 90.5% |
| 4506168 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.63 | 51.0 | 4.53e-01 | 100.0% | 60.0% |
| 3168355 | 2485.1.1.17 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › OST3_OST6 | 0.63 | 56.0 | 4.85e-01 | 100.0% | 80.8% |
| 3866897 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.63 | 53.0 | 5.12e-01 | 97.6% | 80.0% |
| 5043412 | 1025.1.1.0 ↗ | alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain | 0.62 | 49.0 | 4.44e-01 | 85.5% | 61.7% |
| 4963777 | 604.12.1.137 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF373 | 0.62 | 53.0 | 4.42e-01 | 98.8% | 53.3% |
| 4044992 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.62 | 52.0 | 4.80e-01 | 90.4% | 81.9% |
| 3578025 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.62 | 52.0 | 4.64e-01 | 94.0% | 77.5% |
| 3620604 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.62 | 52.0 | 5.15e-01 | 90.4% | 87.1% |
| 3380244 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.61 | 50.0 | 5.10e-01 | 95.2% | 90.0% |
| 3741853 | 148.1.1.12 ↗ | alpha arrays › Histone-like › Histone-related › Histone › Bromo_TP | 0.61 | 49.0 | 4.79e-01 | 97.6% | 78.9% |
| 3405975 | 633.21.1.42 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF4781 | 0.61 | 53.0 | 4.05e-01 | 96.4% | 42.2% |
| 3227134 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.61 | 45.0 | 4.12e-01 | 78.3% | 60.0% |
| 3400028 | 3843.1.1.30 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › DUF4781 | 0.60 | 54.0 | 5.42e-01 | 100.0% | 97.6% |
| 4681786 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.60 | 50.0 | 4.68e-01 | 92.8% | 77.1% |
| 5052035 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.58 | 51.0 | 3.61e-01 | 100.0% | 35.0% |
| 5045401 | 1075.4.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold | 0.57 | 45.0 | 3.20e-01 | 85.5% | 91.5% |
| 3738246 | 5061.1.1.2 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY,Plug_translocon | 0.57 | 47.0 | 3.01e-01 | 95.2% | 18.9% |
| 5034368 | 5061.1.1.1 ↗ | alpha complex topology › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › Preprotein translocase SecY subunit › SecY | 0.57 | 48.0 | 3.01e-01 | 95.2% | 18.6% |
| 3373332 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.56 | 44.0 | 4.50e-01 | 95.2% | 88.7% |
| 3617618 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.56 | 49.0 | 3.11e-01 | 98.8% | 31.5% |
| 3736660 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 50.0 | 4.19e-01 | 100.0% | 84.4% |
| 3178266 | 373.1.1.0 ↗ | few secondary structure elements › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain › Zn2/Cys6 DNA-binding domain | 0.54 | 47.0 | 3.45e-01 | 97.6% | 39.1% |
| 3252296 | 601.55.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › anti-complement domain of BBK32 › anti-complement domain of BBK32 › NCA2 | 0.54 | 43.0 | 4.14e-01 | 86.7% | 97.9% |
| 4943798 | 2484.1.1.302 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB | 0.53 | 45.0 | 3.33e-01 | 94.0% | 57.3% |
| 3323862 | 611.9.1.4 ↗ | alpha bundles › N-cbl like › Resistance protein (Rx) N-terminal domain › Resistance protein (Rx) N-terminal domain › Rx_N | 0.52 | 35.0 | 3.62e-01 | 85.5% | 73.8% |
| 4431778 | 589.1.1.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N | 0.52 | 46.0 | 3.52e-01 | 100.0% | 89.2% |