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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00063
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00063
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-87
Domain cluster:
rep: PH2017_36_ELK_O_B_scaffold_2_prodigal-single.1__X__X__00377__D11-79
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1h72C02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.67 | 39.0 | 3.16e-01 | 82.2% | 31.1% |
| 2q14A02 | 1.20.1250.30 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.64 | 47.0 | 3.56e-01 | 76.7% | 98.8% |
| 1u53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.58 | 43.0 | 3.25e-01 | 79.5% | 83.4% |
| 3kyeA00 | 3.30.450.30 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic | 0.58 | 48.0 | 4.22e-01 | 95.9% | 64.7% |
| 2wdoA00 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.56 | 42.0 | 3.54e-01 | 78.1% | 73.2% |
| 1ie0A00 | 3.30.1360.80 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › S-ribosylhomocysteinase (LuxS) | 0.56 | 43.0 | 3.45e-01 | 84.9% | 83.3% |
| 2uvaG03 | 3.30.70.3320 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 39.0 | 3.50e-01 | 74.0% | 63.9% |
| 3gonA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.55 | 42.0 | 3.39e-01 | 80.8% | 55.2% |
| 2ddzE00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.55 | 44.0 | 3.27e-01 | 87.7% | 44.7% |
| 1vm0A00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.54 | 35.0 | 3.26e-01 | 100.0% | 52.7% |
| 2zxqA01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 40.0 | 2.80e-01 | 82.2% | 85.2% |
| 2c8mB00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.54 | 42.0 | 2.87e-01 | 83.6% | 34.7% |
| 4fppA02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 40.0 | 3.35e-01 | 82.2% | 78.1% |
| 2rsvA00 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.53 | 40.0 | 2.58e-01 | 83.6% | 44.2% |
| 4xeaA01 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.53 | 45.0 | 3.25e-01 | 100.0% | 70.1% |
| 4tpvA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.53 | 46.0 | 3.39e-01 | 94.5% | 93.4% |
| 1m55A00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.53 | 41.0 | 3.11e-01 | 87.7% | 68.4% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.52 | 47.0 | 3.36e-01 | 100.0% | 79.3% |
| 4bxiA00 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.52 | 41.0 | 3.38e-01 | 90.4% | 93.2% |
| 3l1aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.51 | 45.0 | 3.26e-01 | 100.0% | 51.4% |
| 1q2lA04 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 43.0 | 3.13e-01 | 100.0% | 78.5% |
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.50 | 44.0 | 3.33e-01 | 100.0% | 55.6% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 165182 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.61 | 43.0 | 3.29e-01 | 74.0% | 60.6% |
| 3431233 | 3887.2.1.1 ↗ | a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung | 0.61 | 51.0 | 5.08e-01 | 100.0% | 89.3% |
| 4940988 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.60 | 41.0 | 3.56e-01 | 71.2% | 76.4% |
| 1954213 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.59 | 40.0 | 3.20e-01 | 71.2% | 75.9% |
| 216794 | 304.58.1.0 ↗ | a+b two layers › Alpha-beta plaits › FepE-like › FepE-like | 0.58 | 52.0 | 3.66e-01 | 100.0% | 94.4% |
| 5029644 | 304.39.1.1 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd | 0.58 | 40.0 | 3.56e-01 | 72.6% | 64.8% |
| 3929392 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.57 | 49.0 | 4.21e-01 | 100.0% | 62.4% |
| 3489670 | 309.1.1.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › LuxS/MPP-like metallohydrolase | 0.55 | 50.0 | 3.50e-01 | 100.0% | 63.9% |
| 3283186 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.53 | 40.0 | 3.25e-01 | 82.2% | 50.3% |
| 7024 | 314.1.1.9 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His | 0.52 | 45.0 | 3.06e-01 | 97.3% | 41.8% |
| 3470249 | 304.42.1.0 ↗ | a+b two layers › Alpha-beta plaits › Molybdenum cofactor biosynthesis protein C, MoaC › Molybdenum cofactor biosynthesis protein C, MoaC | 0.51 | 41.0 | 3.30e-01 | 86.3% | 93.8% |
| 3488760 | 3937.1.1.0 ↗ | alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 | 0.51 | 46.0 | 3.01e-01 | 100.0% | 79.3% |
| 3823551 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.51 | 37.0 | 2.97e-01 | 91.8% | 38.6% |
| 3254376 | 229.1.1.0 ↗ | a+b two layers › Cdc48 domain 2-like › Cdc48 domain 2-like › Cdc48 domain 2-like | 0.50 | 37.0 | 3.86e-01 | 100.0% | 92.2% |