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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00131
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00131
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 60-230
D2
medium
residues 1-59
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cjaA02 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.70 | 47.0 | 3.38e-01 | 71.2% | 88.1% |
| 1xkpC00 | 3.30.1460.10 | Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › | 0.66 | 49.0 | 3.86e-01 | 79.7% | 51.6% |
| 2b0lC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 43.0 | 3.73e-01 | 84.7% | 45.7% |
| 4rs8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 39.0 | 3.49e-01 | 83.1% | 47.6% |
| 1sd4A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 37.0 | 3.64e-01 | 83.1% | 57.8% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.59 | 44.0 | 3.74e-01 | 81.4% | 75.5% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 37.0 | 3.60e-01 | 83.1% | 57.8% |
| 2oqgB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 38.0 | 3.07e-01 | 81.4% | 36.1% |
| 3gw2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 40.0 | 3.46e-01 | 79.7% | 45.2% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 38.0 | 3.60e-01 | 86.4% | 56.5% |
| 5iceA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.37e-01 | 83.1% | 41.6% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 36.0 | 3.65e-01 | 79.7% | 63.8% |
| 4nkwA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.58 | 47.0 | 2.89e-01 | 96.6% | 81.7% |
| 1r1uB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 40.0 | 3.46e-01 | 81.4% | 46.2% |
| 5koxA02 | 3.30.70.2450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 41.0 | 3.70e-01 | 78.0% | 66.3% |
| 1e6vB02 | 1.20.840.10 | Mainly Alpha › Up-down Bundle › Methyl-coenzyme M Reductase; Chain B, domain 2 › Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal | 0.57 | 42.0 | 2.76e-01 | 81.4% | 26.6% |
| 3mwmA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 39.0 | 3.62e-01 | 86.4% | 56.0% |
| 2co5A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 40.0 | 3.49e-01 | 88.1% | 47.8% |
| 2qmaA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 44.0 | 3.66e-01 | 93.2% | 87.2% |
| 2fe3B01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 37.0 | 3.31e-01 | 83.1% | 47.1% |
| 4asnA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 37.0 | 3.26e-01 | 81.4% | 44.4% |
| 3htuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 38.0 | 3.57e-01 | 88.1% | 57.3% |
| 3cuqA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.56e-01 | 74.6% | 55.0% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 39.0 | 3.38e-01 | 84.7% | 47.8% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.54 | 41.0 | 2.54e-01 | 86.4% | 82.7% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.39e-01 | 86.4% | 53.0% |
| 3elkA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.24e-01 | 88.1% | 44.8% |
| 1g59A03 | 3.90.800.10 | Alpha Beta › Alpha-Beta Complex › Glutamyl-tRNA Synthetase; domain 3 › Glutamyl-tRNA Synthetase; Domain 3 | 0.53 | 39.0 | 3.20e-01 | 81.4% | 81.0% |
| 4gyiA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 35.0 | 3.06e-01 | 83.1% | 44.1% |
| 3bz6A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 38.0 | 3.46e-01 | 78.0% | 61.5% |
| 2dk8A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.64e-01 | 76.3% | 93.8% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.51 | 34.0 | 3.26e-01 | 83.1% | 57.1% |
| 6qpqB00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.50 | 38.0 | 3.49e-01 | 89.8% | 61.7% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4963142 | 101.1.2.908 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF5787 | 0.65 | 39.0 | 3.57e-01 | 79.7% | 48.0% |
| 4970958 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.63 | 39.0 | 3.83e-01 | 81.4% | 57.8% |
| 5034976 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 41.0 | 3.60e-01 | 83.1% | 47.1% |
| 4983312 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.62 | 39.0 | 3.44e-01 | 83.1% | 43.2% |
| 5069963 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.62 | 41.0 | 3.47e-01 | 81.4% | 42.1% |
| 4467985 | 101.1.2.22 ↗ | alpha arrays › HTH › HTH › winged helix domain › PCI | 0.61 | 44.0 | 3.69e-01 | 81.4% | 45.0% |
| 5068565 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.61 | 38.0 | 3.32e-01 | 81.4% | 42.2% |
| 5057087 | 101.1.2.530 ↗ | alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 | 0.61 | 38.0 | 3.55e-01 | 81.4% | 50.7% |
| 3973055 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 39.0 | 3.49e-01 | 83.1% | 47.5% |
| 5054374 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 37.0 | 3.89e-01 | 81.4% | 68.5% |
| 2697 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 39.0 | 3.60e-01 | 86.4% | 51.9% |
| 5041526 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.60 | 39.0 | 3.95e-01 | 86.4% | 66.7% |
| 3962953 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.60 | 39.0 | 3.16e-01 | 86.4% | 34.8% |
| 1893002 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.59 | 48.0 | 3.24e-01 | 94.9% | 80.3% |
| 4953465 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.59 | 40.0 | 2.85e-01 | 71.2% | 50.8% |
| 5060133 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 41.0 | 3.56e-01 | 72.9% | 48.9% |
| 4927192 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 38.0 | 3.22e-01 | 79.7% | 41.1% |
| 2602 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.58 | 39.0 | 3.03e-01 | 84.7% | 32.8% |
| 3962316 | 873.1.1.0 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain | 0.58 | 41.0 | 3.40e-01 | 78.0% | 44.2% |
| 5075184 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.58 | 42.0 | 2.89e-01 | 78.0% | 91.4% |
| 4937327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 41.0 | 4.26e-01 | 83.1% | 81.8% |
| 3940062 | 2007.2.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase | 0.57 | 40.0 | 2.50e-01 | 74.6% | 91.1% |
| 4021068 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 4.12e-01 | 88.1% | 81.1% |
| 5047052 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.56 | 40.0 | 2.91e-01 | 76.3% | 72.6% |
| 4997643 | 2004.1.1.97 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MobB | 0.56 | 40.0 | 2.78e-01 | 76.3% | 88.1% |
| 3938470 | 109.4.1.544 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ParcG | 0.56 | 41.0 | 2.87e-01 | 83.1% | 40.2% |
| 5046227 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 39.0 | 3.48e-01 | 89.8% | 51.8% |
| 4961853 | 101.1.2.54 ↗ | alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R | 0.55 | 37.0 | 3.43e-01 | 72.9% | 54.7% |
| 4094027 | 101.1.2.59 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF480 | 0.54 | 38.0 | 3.40e-01 | 89.8% | 51.8% |
| 5003077 | 101.1.2.141 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_24 | 0.54 | 37.0 | 3.49e-01 | 71.2% | 91.4% |
| 4631918 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 37.0 | 3.50e-01 | 74.6% | 57.3% |
| 3996571 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.54 | 35.0 | 3.79e-01 | 81.4% | 78.0% |
| 4096444 | 101.1.2.59 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF480 | 0.53 | 37.0 | 3.38e-01 | 88.1% | 53.8% |
| 3287142 | 327.7.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like | 0.53 | 38.0 | 3.31e-01 | 78.0% | 61.0% |
| 5072831 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.72e-01 | 89.8% | 69.8% |
| 4905517 | 323.1.1.43 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › PP-binding, Condensation | 0.53 | 36.0 | 2.50e-01 | 72.9% | 21.8% |
| 5040376 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.52 | 40.0 | 3.23e-01 | 84.7% | 42.6% |
| 3641063 | 5.3.1.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop | 0.52 | 42.0 | 3.28e-01 | 98.3% | 66.7% |
| 3167106 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 39.0 | 3.13e-01 | 83.1% | 55.8% |
| 5071694 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 36.0 | 3.07e-01 | 93.2% | 42.7% |
| 3975404 | 4137.1.1.1 ↗ | a+b three layers › YehU-like › YehU-like › YehU-like › UPF0270 | 0.50 | 38.0 | 3.60e-01 | 81.4% | 92.9% |