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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00200
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00200
Identity
- Kingdom:
- phage
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-141
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01458.24 best | SUFBD_core | 29.7 | 6.30e-07 | 82.1% | 19.0% |
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b0rB00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.79 | 47.0 | 4.52e-01 | 80.0% | 52.5% |
| 1k8fA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.70 | 46.0 | 4.44e-01 | 83.6% | 58.6% |
| 4kh3A00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.69 | 43.0 | 2.93e-01 | 82.1% | 17.9% |
| 4oj5C04 | 2.160.20.130 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.68 | 49.0 | 4.47e-01 | 80.7% | 56.2% |
| 1k4zA00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.68 | 45.0 | 4.33e-01 | 92.9% | 58.6% |
| 1k5cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.68 | 54.0 | 4.08e-01 | 84.3% | 52.9% |
| 5gkdA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.65 | 51.0 | 4.01e-01 | 82.1% | 43.9% |
| 3petA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.63 | 46.0 | 3.94e-01 | 82.9% | 48.2% |
| 2yuhA01 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 44.0 | 4.12e-01 | 83.6% | 59.3% |
| 4w8qA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.60 | 47.0 | 3.92e-01 | 82.1% | 53.0% |
| 5c1cA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.60 | 45.0 | 3.53e-01 | 82.1% | 37.1% |
| 3riqA00 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 49.0 | 3.29e-01 | 93.6% | 23.5% |
| 7dmkA02 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.58 | 51.0 | 3.99e-01 | 95.7% | 62.5% |
| 1rwrA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.57 | 50.0 | 3.87e-01 | 94.3% | 43.8% |
| 3ljyA00 | 2.160.20.120 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.57 | 45.0 | 3.79e-01 | 84.3% | 73.2% |
| 1pxzA00 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.55 | 50.0 | 3.75e-01 | 99.3% | 66.5% |
| 3ak5D02 | 2.160.20.20 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.53 | 46.0 | 2.92e-01 | 95.0% | 37.2% |
| 1sqsA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.51 | 42.0 | 3.64e-01 | 90.7% | 91.8% |
ECOD (62)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028334 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.92 | 88.0 | 6.14e-01 | 100.0% | 42.8% |
| 4990150 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.91 | 87.0 | 6.18e-01 | 100.0% | 41.4% |
| 5058805 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.91 | 87.0 | 5.87e-01 | 100.0% | 34.4% |
| 5026189 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.91 | 87.0 | 6.08e-01 | 100.0% | 42.8% |
| 3979669 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.91 | 87.0 | 5.83e-01 | 100.0% | 35.4% |
| 4634184 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 86.0 | 6.54e-01 | 100.0% | 55.3% |
| 5058080 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 86.0 | 6.01e-01 | 100.0% | 39.7% |
| 4929186 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 86.0 | 5.78e-01 | 100.0% | 35.8% |
| 4028692 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 86.0 | 5.80e-01 | 100.0% | 34.8% |
| 4963654 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 86.0 | 5.98e-01 | 100.0% | 39.2% |
| 5028836 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.90 | 85.0 | 6.74e-01 | 100.0% | 63.1% |
| 3984121 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.89 | 85.0 | 5.84e-01 | 100.0% | 37.1% |
| 4040388 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.89 | 85.0 | 5.77e-01 | 100.0% | 36.0% |
| 4101649 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.89 | 71.0 | 5.58e-01 | 82.1% | 60.8% |
| 5039321 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.88 | 84.0 | 5.72e-01 | 100.0% | 35.6% |
| 5059814 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.88 | 84.0 | 5.93e-01 | 100.0% | 41.3% |
| 3832705 | 207.8.1.2 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD,SufBD_N | 0.88 | 84.0 | 5.71e-01 | 100.0% | 35.9% |
| 5022823 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.88 | 84.0 | 6.25e-01 | 100.0% | 48.4% |
| 4333063 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.88 | 84.0 | 6.17e-01 | 100.0% | 46.5% |
| 4995410 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.88 | 83.0 | 6.15e-01 | 100.0% | 51.1% |
| 3422947 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 83.0 | 5.69e-01 | 100.0% | 36.7% |
| 4976134 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 83.0 | 6.14e-01 | 99.3% | 47.9% |
| 3952557 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 82.0 | 5.82e-01 | 100.0% | 42.3% |
| 4983794 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 82.0 | 5.71e-01 | 100.0% | 41.0% |
| 4029692 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 82.0 | 5.96e-01 | 100.0% | 44.5% |
| 4567319 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.87 | 82.0 | 5.59e-01 | 100.0% | 35.2% |
| 3959841 | 207.8.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD | 0.87 | 82.0 | 5.77e-01 | 100.0% | 41.8% |
| 4320009 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.86 | 69.0 | 5.47e-01 | 82.9% | 61.5% |
| 4144650 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.86 | 69.0 | 5.47e-01 | 82.9% | 61.5% |
| 4562874 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.86 | 70.0 | 5.58e-01 | 84.3% | 63.5% |
| 4946338 | 207.8.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD › SUFBD | 0.86 | 81.0 | 6.07e-01 | 99.3% | 48.1% |
| 4436233 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.85 | 68.0 | 5.30e-01 | 82.9% | 59.3% |
| 4406918 | 207.6.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP | 0.85 | 48.0 | 4.98e-01 | 80.7% | 60.0% |
| 4540273 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.85 | 67.0 | 5.45e-01 | 82.1% | 61.2% |
| 3391275 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.83 | 42.0 | 4.88e-01 | 80.7% | 66.7% |
| 3546698 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.83 | 55.0 | 5.23e-01 | 80.7% | 58.7% |
| 3613280 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.82 | 66.0 | 4.20e-01 | 83.6% | 32.0% |
| 3744798 | 208.1.1.43 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › DUF1720 | 0.81 | 42.0 | 4.12e-01 | 80.7% | 47.3% |
| 3855439 | 207.8.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Stabilizer of iron transporter sufD › Stabilizer of iron transporter sufD | 0.81 | 63.0 | 4.90e-01 | 81.4% | 43.5% |
| 3246091 | 389.1.1.157 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › Epiglycanin_TR | 0.80 | 61.0 | 5.55e-01 | 78.6% | 80.0% |
| 3414694 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.78 | 62.0 | 3.74e-01 | 82.9% | 14.8% |
| 3483229 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.77 | 64.0 | 4.35e-01 | 88.6% | 38.9% |
| 4307386 | 207.6.1.16 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C › FARP | 0.75 | 39.0 | 3.54e-01 | 80.7% | 37.8% |
| 3711105 | 208.7.1.6 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein › Nucleoporin_FG | 0.74 | 34.0 | 3.40e-01 | 79.3% | 40.7% |
| 3926145 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.69 | 51.0 | 4.46e-01 | 82.1% | 53.8% |
| 4951076 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.69 | 38.0 | 3.95e-01 | 80.7% | 55.6% |
| 5020283 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 38.0 | 4.01e-01 | 80.0% | 60.0% |
| 5005047 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.68 | 38.0 | 3.83e-01 | 80.0% | 53.6% |
| 5002393 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.68 | 38.0 | 4.06e-01 | 79.3% | 62.5% |
| 3787858 | 207.9.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pentapeptide repeats › Pentapeptide repeats | 0.67 | 38.0 | 3.71e-01 | 80.0% | 50.0% |
| 3305986 | 208.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Grass antifreeze protein › Grass antifreeze protein | 0.66 | 32.0 | 3.54e-01 | 80.7% | 54.8% |
| 3800711 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.64 | 36.0 | 3.59e-01 | 79.3% | 51.3% |
| 998972 | 207.2.1.18 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF2807 | 0.63 | 46.0 | 3.94e-01 | 82.9% | 48.2% |
| 3877532 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.63 | 35.0 | 3.49e-01 | 82.9% | 51.3% |
| 3964571 | 207.2.1.75 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pertactin, Beta-sol_PIC_HAP1_IgA0_2nd | 0.62 | 50.0 | 3.09e-01 | 84.3% | 31.1% |
| 3901107 | 207.6.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Serralysin-like metalloprotease-C › Serralysin-like metalloprotease-C | 0.59 | 36.0 | 3.83e-01 | 82.1% | 69.2% |
| 1285094 | 207.2.1.18 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › DUF2807 | 0.59 | 48.0 | 3.93e-01 | 85.0% | 52.7% |
| 1503840 | 207.13.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix | 0.57 | 45.0 | 3.28e-01 | 82.1% | 32.1% |
| 4025775 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.57 | 38.0 | 4.12e-01 | 82.1% | 80.9% |
| 3596944 | 208.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes | 0.55 | 39.0 | 3.80e-01 | 84.3% | 66.5% |
| 4984638 | 207.7.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C | 0.53 | 42.0 | 3.35e-01 | 84.3% | 46.5% |
| 4030641 | 207.14.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Bactofilin A › Bactofilin A | 0.50 | 39.0 | 3.73e-01 | 80.7% | 77.6% |