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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00235
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00235
Identity
- Kingdom:
- phage
Quality
83.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-129
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q9rA01 | 1.20.1590.10 | Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like | 0.59 | 44.0 | 3.56e-01 | 82.2% | 79.0% |
| 3rkgA02 | 1.20.58.340 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region | 0.55 | 39.0 | 3.20e-01 | 74.4% | 63.4% |
| 6wv5A01 | 1.20.1440.130 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › VKOR domain | 0.55 | 37.0 | 3.26e-01 | 70.0% | 91.9% |
| 2mpkA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.54 | 37.0 | 4.01e-01 | 74.4% | 87.8% |
| 3k3oA02 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 38.0 | 3.90e-01 | 73.3% | 85.7% |
| 5dcaA11 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 47.0 | 4.50e-01 | 100.0% | 94.3% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 38.0 | 3.48e-01 | 76.7% | 100.0% |
| 3nzpB03 | 1.20.58.930 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 34.0 | 3.62e-01 | 75.6% | 75.9% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 36.0 | 3.49e-01 | 74.4% | 86.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3767 | 601.26.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › YppE-like › YppE-like › DUF1798 | 0.57 | 43.0 | 3.91e-01 | 80.0% | 88.6% |
| 3737781 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.57 | 40.0 | 3.80e-01 | 72.2% | 72.4% |
| 4928768 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.57 | 35.0 | 3.41e-01 | 75.6% | 53.3% |
| 3652381 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.55 | 48.0 | 4.49e-01 | 98.9% | 86.1% |
| 3703277 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.54 | 37.0 | 4.06e-01 | 71.1% | 90.0% |
| 3734104 | 101.1.2.392 ↗ | alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH | 0.54 | 41.0 | 4.29e-01 | 82.2% | 91.3% |
| 4942906 | 604.5.1.2 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU | 0.54 | 39.0 | 3.02e-01 | 75.6% | 36.6% |
| 3886005 | 601.2.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes | 0.53 | 40.0 | 3.72e-01 | 80.0% | 93.0% |
| 3855782 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.53 | 41.0 | 3.74e-01 | 82.2% | 88.3% |
| 1877523 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 38.0 | 3.58e-01 | 75.6% | 83.0% |
| 3942162 | 1079.1.1.8 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › LysE | 0.52 | 45.0 | 3.64e-01 | 100.0% | 86.8% |
| 3290723 | 601.1.1.85 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › PaaX_C | 0.52 | 36.0 | 3.48e-01 | 72.2% | 87.6% |
| 4933014 | 3352.1.1.8 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › PTPS_related | 0.51 | 40.0 | 2.76e-01 | 87.8% | 66.2% |
| 5010063 | 604.24.1.1 ↗ | alpha bundles › Spectrin repeat-like › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › Helical bundle domain in putative transcriptional regulator Jann_0659-related proteins › PaaX_C | 0.50 | 35.0 | 3.42e-01 | 74.4% | 65.0% |
| 3610579 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.50 | 34.0 | 3.48e-01 | 71.1% | 80.0% |
| 3954514 | 604.5.1.61 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PF30641 | 0.50 | 36.0 | 3.54e-01 | 75.6% | 71.4% |