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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00237
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00237
Identity
- Kingdom:
- phage
Quality
57.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-150
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4957786 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.56 | 44.0 | 3.68e-01 | 83.7% | 69.3% |
| 3309852 | 5050.1.1.57 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like, NFD4_C | 0.50 | 44.0 | 3.34e-01 | 97.7% | 82.6% |
D2
high
residues 355-407
Domain cluster:
representative
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.83 | 68.0 | 6.51e-01 | 88.7% | 83.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.80 | 65.0 | 5.75e-01 | 88.7% | 75.0% |
| 1vwxS02 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.73 | 58.0 | 5.23e-01 | 88.7% | 75.0% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.72 | 57.0 | 4.49e-01 | 86.8% | 96.3% |
| 3zoqC00 | 6.20.250.30 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.68 | 51.0 | 5.16e-01 | 88.7% | 83.0% |
| 5d79A03 | 3.40.462.20 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › | 0.68 | 52.0 | 3.58e-01 | 84.9% | 43.3% |
| 2f5tX02 | 2.30.30.690 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 54.0 | 4.55e-01 | 88.7% | 72.2% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.64 | 56.0 | 4.33e-01 | 98.1% | 62.4% |
| 2g5dA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.64 | 51.0 | 3.45e-01 | 88.7% | 30.3% |
| 2v3sA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.63 | 53.0 | 4.49e-01 | 100.0% | 76.0% |
| 7bjkA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.62 | 53.0 | 4.19e-01 | 98.1% | 66.4% |
| 2edpA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.61 | 42.0 | 3.65e-01 | 73.6% | 74.4% |
| 2bw2A01 | 3.10.20.420 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Bypass-of-forespore C, N-terminal domain | 0.61 | 48.0 | 4.83e-01 | 94.3% | 92.7% |
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.60 | 47.0 | 4.68e-01 | 88.7% | 100.0% |
| 1t0tV02 | 3.30.70.1030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Apc35880; domain 1 | 0.60 | 46.0 | 3.75e-01 | 88.7% | 86.5% |
| 2eenA00 | 2.40.320.10 | Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 | 0.59 | 44.0 | 3.17e-01 | 84.9% | 44.1% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 47.0 | 3.84e-01 | 96.2% | 87.2% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.59 | 46.0 | 3.87e-01 | 96.2% | 63.0% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.57 | 45.0 | 3.92e-01 | 94.3% | 97.8% |
| 2ekjA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 46.0 | 3.82e-01 | 98.1% | 56.2% |
| 2bpsA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.56 | 47.0 | 4.21e-01 | 100.0% | 98.8% |
| 2jvfA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.55 | 44.0 | 3.83e-01 | 98.1% | 96.8% |
| 2j3wC00 | 3.30.450.70 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.55 | 38.0 | 2.96e-01 | 75.5% | 70.4% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 42.0 | 3.15e-01 | 94.3% | 94.6% |
| 6kryA01 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 44.0 | 3.42e-01 | 100.0% | 55.8% |
| 4zpxA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 42.0 | 2.83e-01 | 90.6% | 35.6% |
| 1vw4U00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.54 | 40.0 | 3.53e-01 | 83.0% | 72.0% |
| 5hccB02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.54 | 45.0 | 3.80e-01 | 98.1% | 65.3% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.53 | 40.0 | 3.33e-01 | 88.7% | 48.6% |
| 5gv0A00 | 2.40.160.110 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 44.0 | 3.26e-01 | 100.0% | 78.4% |
| 2a74A02 | 2.60.40.1930 | Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain | 0.53 | 46.0 | 3.80e-01 | 100.0% | 62.4% |
| 6cc0A01 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.53 | 37.0 | 2.72e-01 | 75.5% | 77.4% |
| 2x65A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.53 | 42.0 | 2.66e-01 | 94.3% | 56.3% |
| 5v7qZ00 | 3.30.1390.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 | 0.53 | 39.0 | 3.81e-01 | 83.0% | 100.0% |
| 2i0kA02 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.52 | 40.0 | 3.10e-01 | 88.7% | 35.7% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.52 | 42.0 | 2.81e-01 | 96.2% | 61.1% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.52 | 43.0 | 3.10e-01 | 98.1% | 96.7% |
| 3fgtA01 | 2.10.70.60 | Mainly Beta › Ribbon › Complement Module; domain 1 › Phospholipase B-like, domain 1 | 0.52 | 44.0 | 4.40e-01 | 98.1% | 92.7% |
| 3rb5A02 | 2.60.40.2030 | Mainly Beta › Sandwich › Immunoglobulin-like › CalX-beta domain | 0.52 | 43.0 | 3.40e-01 | 98.1% | 72.8% |
| 1xreA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.52 | 43.0 | 3.45e-01 | 96.2% | 65.2% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 3.68e-01 | 100.0% | 65.2% |
| 1vlmA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 43.0 | 2.99e-01 | 100.0% | 99.0% |
| 3bgaA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 42.0 | 3.44e-01 | 98.1% | 65.8% |
| 1b1zA02 | 3.10.20.120 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.51 | 40.0 | 3.18e-01 | 98.1% | 78.7% |
| 2pn5A03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 41.0 | 3.43e-01 | 100.0% | 63.8% |
| 1kblA06 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 40.0 | 3.47e-01 | 98.1% | 92.9% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 3.24e-01 | 88.7% | 50.0% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4007508 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.93 | 74.0 | 7.59e-01 | 88.7% | 88.0% |
| 3975705 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.93 | 73.0 | 7.55e-01 | 88.7% | 88.0% |
| 3969006 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.91 | 70.0 | 7.59e-01 | 86.8% | 95.6% |
| 4004704 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.91 | 69.0 | 7.49e-01 | 86.8% | 95.6% |
| 3968122 | 3115.6.1.2 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 | 0.89 | 70.0 | 7.51e-01 | 88.7% | 97.8% |
| 3941732 | 3115.6.1.0 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon | 0.84 | 67.0 | 6.92e-01 | 88.7% | 92.0% |
| 4886584 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.81 | 66.0 | 6.02e-01 | 88.7% | 71.4% |
| 4030871 | 3115.6.1.1 ↗ | a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY | 0.81 | 66.0 | 6.01e-01 | 88.7% | 71.4% |
| 4995671 | 3115.1.1.12 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 | 0.79 | 61.0 | 6.30e-01 | 88.7% | 90.0% |
| 4990637 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 62.0 | 5.32e-01 | 88.7% | 63.9% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.76 | 61.0 | 5.91e-01 | 88.7% | 95.0% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.76 | 61.0 | 6.08e-01 | 88.7% | 92.7% |
| 5000510 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.75 | 60.0 | 5.36e-01 | 88.7% | 74.7% |
| 4160542 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.74 | 59.0 | 5.81e-01 | 88.7% | 98.3% |
| 4013514 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 59.0 | 4.76e-01 | 88.7% | 54.3% |
| 4016088 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.74 | 59.0 | 4.72e-01 | 88.7% | 84.8% |
| 4951473 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.74 | 59.0 | 5.59e-01 | 88.7% | 90.5% |
| 4937773 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.74 | 59.0 | 5.76e-01 | 88.7% | 98.3% |
| 4995672 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.74 | 57.0 | 5.84e-01 | 88.7% | 90.0% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.73 | 56.0 | 5.34e-01 | 86.8% | 87.5% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.72 | 56.0 | 5.51e-01 | 88.7% | 96.6% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.71 | 56.0 | 5.21e-01 | 88.7% | 81.4% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.71 | 55.0 | 5.02e-01 | 88.7% | 76.0% |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.68 | 52.0 | 4.07e-01 | 88.7% | 37.5% |
| 3991293 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.67 | 50.0 | 3.82e-01 | 88.7% | 34.4% |
| 3943126 | 3115.4.1.0 ↗ | a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 | 0.67 | 51.0 | 4.83e-01 | 86.8% | 78.5% |
| 3400735 | 379.1.1.3 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 | 0.66 | 47.0 | 4.67e-01 | 88.7% | 72.7% |
| 5041412 | 304.57.1.0 ↗ | a+b two layers › Alpha-beta plaits › Rpp14/Pop5-like › Rpp14/Pop5-like | 0.66 | 54.0 | 4.72e-01 | 94.3% | 89.4% |
| 3413652 | 379.1.1.0 ↗ | few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors | 0.65 | 52.0 | 5.03e-01 | 88.7% | 78.3% |
| 3988189 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.65 | 50.0 | 4.45e-01 | 86.8% | 92.5% |
| 3742881 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.65 | 56.0 | 4.27e-01 | 98.1% | 68.8% |
| 3256398 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 54.0 | 4.53e-01 | 100.0% | 68.4% |
| 2886666 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.63 | 48.0 | 3.71e-01 | 88.7% | 38.7% |
| 3505298 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.63 | 47.0 | 4.50e-01 | 86.8% | 87.7% |
| 2794904 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.62 | 48.0 | 4.57e-01 | 88.7% | 83.3% |
| 5027001 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.62 | 46.0 | 3.31e-01 | 84.9% | 41.7% |
| 2794885 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.61 | 47.0 | 4.53e-01 | 88.7% | 81.2% |
| 2557261 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.61 | 48.0 | 4.07e-01 | 88.7% | 60.9% |
| 4642338 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.60 | 47.0 | 4.74e-01 | 88.7% | 98.1% |
| 5029530 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 47.0 | 3.35e-01 | 90.6% | 93.5% |
| 5078623 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 45.0 | 3.54e-01 | 86.8% | 56.9% |
| 5042040 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.60 | 47.0 | 3.34e-01 | 88.7% | 92.9% |
| 5052406 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.59 | 44.0 | 3.15e-01 | 84.9% | 48.3% |
| 3240774 | 2492.1.1.36 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like | 0.58 | 44.0 | 3.05e-01 | 90.6% | 31.6% |
| 4983274 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.58 | 43.0 | 3.12e-01 | 84.9% | 43.4% |
| 4978622 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 41.0 | 3.36e-01 | 75.5% | 85.0% |
| 3405565 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.57 | 47.0 | 4.06e-01 | 100.0% | 97.9% |
| 3513760 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 45.0 | 3.65e-01 | 98.1% | 52.5% |
| 3276865 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.56 | 46.0 | 3.88e-01 | 100.0% | 70.0% |
| 5072371 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 39.0 | 3.21e-01 | 75.5% | 95.0% |
| 3702557 | 3945.1.1.0 ↗ | alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain | 0.55 | 43.0 | 3.51e-01 | 100.0% | 63.8% |
| 5044050 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.55 | 45.0 | 3.21e-01 | 90.6% | 95.8% |
| 4490981 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.54 | 41.0 | 3.41e-01 | 88.7% | 46.4% |
| 4998374 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 38.0 | 2.97e-01 | 75.5% | 72.0% |
| 3314826 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.53 | 44.0 | 2.90e-01 | 92.5% | 88.0% |
| 5052357 | 868.1.1.1 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › CYTH | 0.53 | 42.0 | 3.09e-01 | 100.0% | 98.9% |
| 4927303 | 525.1.1.1 ↗ | a+b two layers › Urease, gamma-subunit › Urease, gamma-subunit › Urease, gamma-subunit › Urease_gamma | 0.52 | 43.0 | 3.47e-01 | 100.0% | 97.5% |
| 4331814 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.52 | 39.0 | 3.18e-01 | 86.8% | 47.0% |
| 4798319 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 41.0 | 3.01e-01 | 100.0% | 57.2% |
| 1562384 | 217.1.1.2 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_4 | 0.51 | 44.0 | 2.98e-01 | 100.0% | 90.1% |
| 3724417 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 38.0 | 2.91e-01 | 88.7% | 53.3% |
D3
high
residues 514-573
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2wv3A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 50.0 | 4.43e-01 | 90.0% | 52.3% |
| 2fcbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.69 | 47.0 | 4.17e-01 | 88.3% | 49.4% |
| 3lsoA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 51.0 | 4.43e-01 | 88.3% | 54.3% |
| 1dgsA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.66 | 53.0 | 4.59e-01 | 90.0% | 61.1% |
| 3arxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 45.0 | 3.68e-01 | 88.3% | 39.6% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.63 | 42.0 | 4.06e-01 | 75.0% | 59.2% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 43.0 | 3.71e-01 | 73.3% | 77.6% |
| 7q4lA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.62 | 45.0 | 3.63e-01 | 78.3% | 67.8% |
| 3cwiA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.61 | 35.0 | 3.38e-01 | 76.7% | 50.0% |
| 3cvzB01 | 3.30.1490.290 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Low molecular weight S-layer protein, domain 1 | 0.61 | 45.0 | 3.88e-01 | 81.7% | 57.6% |
| 1d2oA01 | 2.60.40.1140 | Mainly Beta › Sandwich › Immunoglobulin-like › Collagen-binding surface protein Cna, B-type domain | 0.58 | 50.0 | 4.14e-01 | 96.7% | 53.3% |
| 3skvA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.58 | 51.0 | 3.83e-01 | 100.0% | 53.9% |
| 5k6wA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 46.0 | 4.09e-01 | 90.0% | 76.7% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.56 | 42.0 | 4.14e-01 | 85.0% | 75.8% |
| 6kbyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.56 | 46.0 | 2.90e-01 | 95.0% | 86.7% |
| 1tygB00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.56 | 32.0 | 3.19e-01 | 76.7% | 52.3% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.55 | 38.0 | 3.27e-01 | 75.0% | 43.1% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 46.0 | 2.96e-01 | 96.7% | 79.1% |
| 5xbfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 41.0 | 3.71e-01 | 85.0% | 78.2% |
| 4p4tA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 46.0 | 2.90e-01 | 96.7% | 58.5% |
| 2vvfA01 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 43.0 | 3.34e-01 | 90.0% | 74.5% |
| 3vpyA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.54 | 41.0 | 3.09e-01 | 81.7% | 80.0% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.54 | 41.0 | 3.62e-01 | 91.7% | 54.2% |
| 5tipA02 | 2.70.9.20 | Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Major capsid protein Vp54 | 0.54 | 43.0 | 3.02e-01 | 91.7% | 65.1% |
| 2w47A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.53 | 44.0 | 3.42e-01 | 95.0% | 68.1% |
| 1ujrA01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.53 | 38.0 | 3.47e-01 | 78.3% | 84.3% |
| 2jwpA00 | 2.60.120.430 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin | 0.52 | 39.0 | 2.87e-01 | 83.3% | 38.5% |
| 3ec8A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 40.0 | 3.18e-01 | 88.3% | 39.6% |
| 4ggmX02 | 3.40.140.80 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain | 0.52 | 43.0 | 3.31e-01 | 98.3% | 57.3% |
| 2y8kA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 40.0 | 3.14e-01 | 90.0% | 53.8% |
| 2vvfA02 | 2.60.120.730 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.23e-01 | 88.3% | 71.9% |
| 1ywlA00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.51 | 37.0 | 3.31e-01 | 81.7% | 58.3% |
| 5fq0A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 36.0 | 3.06e-01 | 76.7% | 49.1% |
| 5mpoB00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 34.0 | 3.10e-01 | 70.0% | 89.3% |
| 7ehgC01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 39.0 | 3.15e-01 | 88.3% | 61.2% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 40.0 | 3.16e-01 | 93.3% | 49.6% |
| 3fysA01 | 3.40.50.10170 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.50 | 39.0 | 2.95e-01 | 86.7% | 55.6% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.78 | 49.0 | 4.76e-01 | 73.3% | 57.4% |
| 3776388 | 3967.1.1.64 ↗ | extended segments › Mitoribosomal protein mS26 › Mitoribosomal protein mS26 › Mitoribosomal protein mS26 › Band_7 | 0.72 | 42.0 | 4.93e-01 | 78.3% | 87.5% |
| 3620532 | 3529.1.1.6 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 | 0.72 | 42.0 | 4.56e-01 | 78.3% | 70.0% |
| 3884793 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.70 | 41.0 | 4.83e-01 | 78.3% | 87.5% |
| 3277122 | 3529.1.1.6 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Band_7 | 0.67 | 40.0 | 4.60e-01 | 76.7% | 87.5% |
| 1145713 | 11.1.1.212 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_3_5 | 0.67 | 51.0 | 4.37e-01 | 88.3% | 52.1% |
| 3481499 | 223.1.1.119 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_2 | 0.67 | 35.0 | 2.62e-01 | 83.3% | 19.4% |
| 3769454 | 11.1.1.178 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 | 0.67 | 49.0 | 4.19e-01 | 83.3% | 49.5% |
| 3468745 | 221.1.1.207 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ODR4-like | 0.64 | 42.0 | 4.14e-01 | 100.0% | 63.1% |
| 4101509 | 304.1.1.1 ↗ | a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C | 0.62 | 45.0 | 3.58e-01 | 80.0% | 94.0% |
| 4970897 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 49.0 | 4.07e-01 | 91.7% | 49.5% |
| 5081664 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.60 | 50.0 | 4.15e-01 | 91.7% | 78.1% |
| 3993535 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.60 | 42.0 | 3.91e-01 | 91.7% | 56.2% |
| 3591605 | 11.1.1.373 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Lipin_N | 0.60 | 48.0 | 4.32e-01 | 90.0% | 74.1% |
| 2496895 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 44.0 | 3.87e-01 | 83.3% | 56.7% |
| 3540275 | 2006.1.1.75 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Lipin_N, LNS2 | 0.59 | 48.0 | 4.29e-01 | 90.0% | 74.1% |
| 3513247 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.59 | 39.0 | 3.38e-01 | 95.0% | 42.1% |
| 4442629 | 3563.1.1.1 ↗ | alpha bundles › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › Twin arginine protein translocation system component TatC › TatC | 0.59 | 42.0 | 2.78e-01 | 75.0% | 20.1% |
| 3891779 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 36.0 | 3.22e-01 | 83.3% | 42.4% |
| 3605970 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.59 | 45.0 | 3.76e-01 | 85.0% | 52.7% |
| 4000363 | 223.1.1.119 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_2 | 0.59 | 38.0 | 2.83e-01 | 96.7% | 23.5% |
| 3384720 | 11.1.3.7 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Lipin_N | 0.58 | 47.0 | 3.95e-01 | 90.0% | 62.0% |
| 5022231 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 43.0 | 3.58e-01 | 96.7% | 42.4% |
| 3752473 | 11.1.1.179 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 | 0.57 | 47.0 | 4.14e-01 | 91.7% | 80.0% |
| 3250283 | 223.2.1.1 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Profilin | 0.57 | 38.0 | 3.02e-01 | 70.0% | 43.1% |
| 5050426 | 223.2.1.12 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › MAPKK1_Int | 0.57 | 37.0 | 2.99e-01 | 95.0% | 33.9% |
| 5042324 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.56 | 39.0 | 3.54e-01 | 85.0% | 51.1% |
| 4976180 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.84e-01 | 83.3% | 78.8% |
| 5001593 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 37.0 | 2.86e-01 | 70.0% | 48.6% |
| 3551231 | 221.1.1.87 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N_2 | 0.54 | 42.0 | 3.58e-01 | 91.7% | 49.5% |
| 184942 | 10.2.1.56 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N | 0.54 | 43.0 | 3.34e-01 | 90.0% | 74.5% |
| 3357610 | 10.32.1.38 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin_like | 0.54 | 40.0 | 2.76e-01 | 83.3% | 24.8% |
| 3738582 | 11.1.1.598 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › RSC4_Ig_like | 0.53 | 40.0 | 3.06e-01 | 83.3% | 41.3% |
| 3839595 | 3019.1.1.1 ↗ | beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › Flagellin_IN | 0.53 | 41.0 | 3.42e-01 | 85.0% | 81.8% |
| 3832477 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.53 | 35.0 | 3.32e-01 | 70.0% | 92.0% |
| 3421200 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 33.0 | 3.11e-01 | 81.7% | 50.7% |
| 3242830 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.51 | 43.0 | 3.03e-01 | 100.0% | 56.4% |
| 274267 | 10.2.1.87 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P3_C | 0.51 | 41.0 | 3.18e-01 | 93.3% | 81.5% |
| 3414531 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.51 | 38.0 | 3.30e-01 | 95.0% | 51.6% |
| 3483360 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 44.0 | 3.09e-01 | 100.0% | 44.9% |
| 3696397 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 37.0 | 3.17e-01 | 80.0% | 76.2% |
| 3167453 | 73.1.1.1 ↗ | beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA | 0.50 | 34.0 | 2.76e-01 | 71.7% | 90.8% |
| 3699077 | 221.1.1.25 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › APG12 | 0.50 | 37.0 | 3.30e-01 | 88.3% | 53.3% |