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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00247
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00247
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-131
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.75 | 67.0 | 6.05e-01 | 97.1% | 83.1% |
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.69 | 51.0 | 5.71e-01 | 81.0% | 98.8% |
| 1a3gA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.61 | 42.0 | 3.91e-01 | 76.2% | 56.3% |
| 4ciuA04 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 38.0 | 4.07e-01 | 71.4% | 92.5% |
| 1sxjA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.56 | 36.0 | 4.21e-01 | 73.3% | 97.2% |
| 2x5rA01 | 3.30.470.40 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.51 | 39.0 | 3.81e-01 | 82.9% | 92.2% |
| 4d53A00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.50 | 40.0 | 3.71e-01 | 85.7% | 72.2% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3307439 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.81 | 57.0 | 5.42e-01 | 72.4% | 73.8% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.79 | 58.0 | 6.46e-01 | 80.0% | 94.1% |
| 1144783 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 60.0 | 5.08e-01 | 97.1% | 51.9% |
| 3397473 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.78 | 64.0 | 6.12e-01 | 87.6% | 75.8% |
| 3561303 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 64.0 | 5.48e-01 | 91.4% | 57.6% |
| 3879791 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.76 | 64.0 | 4.95e-01 | 91.4% | 42.2% |
| 2991844 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.74 | 55.0 | 5.49e-01 | 94.3% | 74.3% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.74 | 67.0 | 5.99e-01 | 97.1% | 83.1% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.73 | 67.0 | 6.36e-01 | 100.0% | 92.8% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.72 | 50.0 | 5.83e-01 | 73.3% | 100.0% |
| 4994221 | 4020.1.1.3 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › TFX_C | 0.70 | 42.0 | 5.01e-01 | 73.3% | 90.0% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 51.0 | 5.86e-01 | 85.7% | 100.0% |
| 4187709 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.70 | 56.0 | 3.65e-01 | 94.3% | 21.2% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.68 | 52.0 | 5.46e-01 | 82.9% | 87.6% |
| 2550470 | 378.1.1.10 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_4 | 0.68 | 55.0 | 4.66e-01 | 97.1% | 54.2% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.67 | 49.0 | 4.50e-01 | 76.2% | 59.7% |
| 8235 | 378.1.1.3 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 | 0.64 | 48.0 | 4.91e-01 | 78.1% | 94.2% |
| 2322754 | 376.1.2.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › C1_4 | 0.60 | 36.0 | 4.24e-01 | 80.0% | 85.1% |
| 4154381 | 148.1.3.8 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › ClpB_D2-small | 0.59 | 41.0 | 4.41e-01 | 71.4% | 95.6% |
| 3611194 | 376.1.3.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › RH_dom | 0.58 | 41.0 | 4.14e-01 | 72.4% | 82.7% |
| 3916229 | 376.1.1.21 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 | 0.57 | 36.0 | 4.14e-01 | 76.2% | 89.3% |
| 3876488 | 632.7.1.31 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › RH_dom | 0.56 | 39.0 | 4.34e-01 | 72.4% | 94.1% |
| 3244537 | 6060.1.1.1 ↗ | alpha arrays › Yst0336-like › Yst0336-like › Yst0336-like › PBDC1 | 0.55 | 46.0 | 4.12e-01 | 88.6% | 81.4% |
| 5004271 | 2498.1.1.1 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M10 | 0.52 | 41.0 | 3.65e-01 | 85.7% | 83.6% |
| 3296109 | 206.1.2.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › SAICAR synthase › SAICAR_synt | 0.52 | 36.0 | 2.61e-01 | 71.4% | 79.7% |
| 3662507 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 33.0 | 3.86e-01 | 86.7% | 93.3% |
| 3698849 | 376.1.3.3 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE | 0.51 | 35.0 | 3.76e-01 | 70.5% | 90.0% |
| 3993483 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.51 | 33.0 | 3.32e-01 | 86.7% | 64.8% |