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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00306

Bact-Vir

PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00306

Identity

Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 73-126
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rrnA01 3.30.70.2040 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 67.0 5.80e-01 100.0% 81.9%
5b3hC01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.73 36.0 3.88e-01 100.0% 54.2%
2ozpA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.71 50.0 3.56e-01 75.9% 41.9%
2cqhA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 60.0 5.14e-01 100.0% 71.0%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.71 61.0 5.05e-01 100.0% 68.7%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.70 59.0 5.56e-01 100.0% 92.8%
2e5jA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.70 60.0 5.17e-01 100.0% 73.9%
1vw4700 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.70 58.0 4.82e-01 100.0% 52.8%
3ezjA03 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.70 56.0 5.58e-01 100.0% 90.9%
1qupA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 60.0 5.56e-01 100.0% 85.7%
2m88A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.69 60.0 5.21e-01 100.0% 77.9%
2pffB05 3.30.70.2430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.69 58.0 5.68e-01 100.0% 91.8%
3wdoA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 57.0 5.59e-01 98.1% 93.4%
4hkqA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.68 58.0 4.36e-01 100.0% 50.7%
4v1al00 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.67 57.0 4.37e-01 100.0% 44.4%
1x4dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 57.0 4.72e-01 100.0% 70.6%
4p6qA03 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 57.0 4.85e-01 100.0% 71.6%
6e4nA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 58.0 5.34e-01 100.0% 94.4%
1wexA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 57.0 5.24e-01 100.0% 97.3%
1whyA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.67 56.0 5.20e-01 100.0% 91.7%
2l9wA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.66 55.0 4.56e-01 100.0% 63.9%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.66 56.0 4.94e-01 100.0% 85.5%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 56.0 4.90e-01 100.0% 69.4%
1s2oA02 3.90.1070.10 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.66 46.0 4.28e-01 75.9% 60.6%
1wg1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.65 54.0 5.08e-01 100.0% 94.4%
2la4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.63 52.0 4.42e-01 100.0% 67.3%
1w23A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 51.0 4.29e-01 98.1% 85.4%
2p1wA01 3.30.2430.10 Alpha Beta › 2-Layer Sandwich › Phosphothreonine lyase fold › phosphothreonine lyase 0.62 50.0 3.67e-01 100.0% 57.5%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.45e-01 100.0% 74.2%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 51.0 4.48e-01 100.0% 75.3%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.36e-01 100.0% 66.0%
1lxnA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 50.0 4.31e-01 100.0% 73.5%
2yx1A01 3.30.70.2580 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 49.0 4.73e-01 100.0% 84.8%
4tqrA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.60 49.0 4.23e-01 100.0% 70.4%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.59 48.0 3.42e-01 100.0% 29.3%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 3.37e-01 87.0% 44.6%
2lrrA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.57 40.0 3.79e-01 77.8% 61.4%
3c0wA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.57 45.0 3.78e-01 92.6% 54.4%
3gqcC01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.57 46.0 3.59e-01 100.0% 58.4%
4dezA01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.56 46.0 3.94e-01 100.0% 67.7%
1k78B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.35e-01 79.6% 59.8%
3gv5B01 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.55 44.0 3.53e-01 100.0% 78.0%
3slhA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.54 46.0 3.14e-01 100.0% 91.9%
2l4mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.53e-01 75.9% 66.7%
4rxlA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 43.0 3.53e-01 100.0% 98.3%
1ucrB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.37e-01 77.8% 65.3%
3zcoA00 1.10.10.2450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.52 39.0 3.10e-01 87.0% 91.3%
3lfjB00 3.40.35.10 Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component 0.51 41.0 2.91e-01 88.9% 60.8%
1g6sA02 3.65.10.10 Alpha Beta › Alpha-beta prism › UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain › Enolpyruvate transferase domain 0.51 43.0 3.01e-01 100.0% 84.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5053453 386.1.1.74 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-Di19 0.77 38.0 3.83e-01 100.0% 47.3%
3182508 4340.1.1.0 ↗ a+b complex topology › TFB5-related › TFB5-related › TFB5-related 0.74 61.0 6.12e-01 98.1% 92.7%
4937548 304.54.1.0 ↗ a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like 0.72 60.0 5.97e-01 100.0% 94.5%
5088 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.71 60.0 5.39e-01 100.0% 82.5%
5072231 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.71 61.0 5.69e-01 100.0% 90.0%
3594722 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.71 62.0 4.93e-01 100.0% 62.7%
3578641 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.71 61.0 5.67e-01 100.0% 90.0%
2800426 327.16.1.3 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › Secretin_N 0.70 58.0 5.55e-01 98.1% 80.0%
3575428 304.9.1.36 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_10 0.70 60.0 4.93e-01 100.0% 63.8%
3476964 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.70 61.0 4.78e-01 100.0% 59.1%
3886756 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.69 61.0 4.98e-01 100.0% 69.0%
3264200 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.69 60.0 5.00e-01 100.0% 73.7%
3716821 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.69 49.0 4.39e-01 75.9% 54.7%
5044181 304.117.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC 0.69 57.0 5.28e-01 100.0% 88.0%
3424629 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 58.0 5.42e-01 98.1% 95.7%
3383967 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 61.0 5.21e-01 100.0% 81.2%
3785450 304.9.1.103 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF26763 0.68 57.0 4.97e-01 100.0% 77.8%
4452423 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.68 58.0 4.77e-01 100.0% 61.0%
4955075 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.68 48.0 4.38e-01 75.9% 79.5%
4014808 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.68 58.0 5.16e-01 100.0% 87.5%
3976571 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 57.0 5.11e-01 100.0% 85.0%
3881756 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.67 57.0 4.70e-01 100.0% 69.5%
3248261 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.67 58.0 5.38e-01 100.0% 90.0%
5056296 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.67 56.0 5.50e-01 100.0% 96.7%
3611405 320.1.1.0 ↗ a+b two layers › R3H domain-like › R3H domain › R3H domain 0.66 47.0 4.46e-01 75.9% 63.1%
4683278 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.66 57.0 4.98e-01 100.0% 74.1%
3917113 304.9.1.63 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_PARP14_3 0.66 56.0 4.91e-01 100.0% 78.8%
4327654 327.16.1.10 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › PF29189 0.66 57.0 5.54e-01 100.0% 91.7%
2075041 3012.1.1.3 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › S6PP 0.66 46.0 4.28e-01 75.9% 60.6%
3670856 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.65 56.0 4.73e-01 100.0% 72.6%
3784346 101.1.2.22 ↗ alpha arrays › HTH › HTH › winged helix domain › PCI 0.65 48.0 4.17e-01 79.6% 77.6%
3425203 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.65 55.0 5.34e-01 98.1% 96.7%
3394642 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 55.0 4.75e-01 100.0% 87.6%
3232266 304.9.1.84 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF28975 0.65 54.0 4.52e-01 100.0% 61.0%
3876216 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.65 54.0 4.51e-01 100.0% 67.6%
3386543 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.64 54.0 5.17e-01 100.0% 93.8%
3248028 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.64 54.0 4.94e-01 100.0% 88.0%
3744728 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.63 48.0 5.01e-01 90.7% 95.8%
3608461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 45.0 4.32e-01 77.8% 73.8%
4955746 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.63 53.0 4.67e-01 100.0% 67.1%
3930818 304.9.1.11 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Nup35_RRM 0.62 51.0 4.52e-01 100.0% 72.2%
3598016 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.05e-01 79.6% 65.0%
3988398 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.62 51.0 4.41e-01 100.0% 69.5%
4316367 304.55.2.7 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › tRNA_synt_2f 0.61 37.0 2.44e-01 94.4% 14.9%
4995074 2006.1.1.11 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 0.58 46.0 3.16e-01 94.4% 32.4%
3989930 304.128.1.0 ↗ a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB 0.58 47.0 4.36e-01 100.0% 86.7%
4995648 2002.1.1.152 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 0.57 45.0 2.71e-01 88.9% 80.9%
5046810 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 3.08e-01 70.4% 35.5%
3658365 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.57 49.0 3.11e-01 100.0% 33.7%
3785109 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 43.0 3.39e-01 88.9% 62.3%
3709395 304.11.1.0 ↗ a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.55 45.0 4.16e-01 96.3% 89.3%
4938715 306.2.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › arginine repressor C terminal domain-related › C-terminal domain of arginine repressor 0.55 43.0 3.91e-01 98.1% 76.5%
5023727 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.55 40.0 3.05e-01 79.6% 79.3%
4955265 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.54 42.0 3.18e-01 85.2% 72.3%
4039619 101.1.2.2 ↗ alpha arrays › HTH › HTH › winged helix domain › Ets 0.54 41.0 3.34e-01 88.9% 47.8%
3603159 101.1.2.209 ↗ alpha arrays › HTH › HTH › winged helix domain › MJ1010-like_2nd 0.53 41.0 3.82e-01 87.0% 72.9%
4958811 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 43.0 3.30e-01 98.1% 65.9%
3480815 11.1.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Cadherin 0.52 41.0 3.20e-01 94.4% 80.7%
4938625 328.6.1.1 ↗ a+b two layers › IF3-like › EPT/RTPC-like › EPT/RTPC-like › EPSP_synthase 0.51 44.0 2.97e-01 100.0% 88.6%
3237702 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 38.0 3.38e-01 85.2% 64.7%
432369 101.1.2.144 ↗ alpha arrays › HTH › HTH › winged helix domain › NFRKB_winged 0.51 41.0 3.43e-01 98.1% 90.7%