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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00325
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00325
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-77
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7rxpA01 | 2.20.100.10 | Mainly Beta › Single Sheet › TSP-1 type 1 repeat › Thrombospondin type-1 (TSP1) repeat | 0.61 | 33.0 | 3.61e-01 | 74.0% | 64.4% |
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.55 | 35.0 | 4.03e-01 | 84.4% | 98.0% |
| 3ir3A00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.54 | 38.0 | 3.31e-01 | 76.6% | 76.2% |
| 3qmfA01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.53 | 39.0 | 3.38e-01 | 80.5% | 60.4% |
| 2nraC02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.49e-01 | 75.3% | 96.1% |
| 4p4mA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.53 | 39.0 | 3.46e-01 | 79.2% | 100.0% |
| 3znuA00 | 3.30.70.1060 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel | 0.51 | 36.0 | 3.38e-01 | 74.0% | 75.5% |
| 3h4oA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.50 | 38.0 | 3.04e-01 | 84.4% | 67.8% |
| 2rijA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 38.0 | 3.14e-01 | 87.0% | 87.3% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928896 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.65 | 44.0 | 3.90e-01 | 70.1% | 95.5% |
| 3186646 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.58 | 37.0 | 3.52e-01 | 70.1% | 53.7% |
| 5047178 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.56 | 40.0 | 3.32e-01 | 75.3% | 76.9% |
| 3927766 | 223.2.1.3 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s | 0.53 | 37.0 | 3.04e-01 | 72.7% | 65.5% |
| 5065983 | 75.1.1.0 ↗ | beta barrels › Cyclophilin-like › Cyclophilin-like › Cyclophilin-like | 0.52 | 42.0 | 3.79e-01 | 92.2% | 64.3% |
| 4143734 | 4263.2.1.1 ↗ | a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext | 0.52 | 34.0 | 3.38e-01 | 70.1% | 63.7% |
D2
medium
residues 78-188
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5jqyA02 | 2.60.120.330 | Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain | 0.82 | 49.0 | 3.95e-01 | 92.8% | 34.2% |
| 3h8uA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.73 | 41.0 | 4.01e-01 | 88.3% | 50.0% |
| 5vn6A00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.73 | 60.0 | 4.48e-01 | 88.3% | 65.6% |
| 5bkeC00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.70 | 58.0 | 4.31e-01 | 89.2% | 58.5% |
| 3bb6C00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.69 | 44.0 | 4.43e-01 | 89.2% | 63.4% |
| 2wbpA00 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.69 | 57.0 | 4.05e-01 | 89.2% | 50.3% |
| 2rg4A01 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.67 | 50.0 | 4.11e-01 | 88.3% | 44.8% |
| 6f9pC01 | 3.60.130.10 | Alpha Beta › 4-Layer Sandwich › Double-stranded beta-helix › Clavaminate synthase-like | 0.67 | 55.0 | 3.94e-01 | 89.2% | 46.0% |
| 4a7kA02 | 2.60.120.990 | Mainly Beta › Sandwich › Jelly Rolls › | 0.65 | 56.0 | 3.98e-01 | 91.9% | 34.6% |
| 7chiA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.63 | 43.0 | 3.41e-01 | 88.3% | 35.6% |
| 2qqkA02 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.62 | 43.0 | 4.30e-01 | 91.9% | 68.7% |
| 6aj3B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 47.0 | 4.14e-01 | 89.2% | 88.0% |
| 3winE03 | 2.60.120.1090 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 39.0 | 3.99e-01 | 86.5% | 76.4% |
| 2zxqA04 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 39.0 | 3.53e-01 | 75.7% | 91.8% |
| 1tme300 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 45.0 | 3.57e-01 | 92.8% | 59.1% |
| 1opoC01 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.84e-01 | 89.2% | 79.4% |
| 2nykA02 | 2.60.40.2530 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 26.0 | 2.87e-01 | 88.3% | 54.0% |
| 1e57B00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.70e-01 | 89.2% | 69.4% |
| 4fy1100 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 3.48e-01 | 89.2% | 69.1% |
| 6jhsA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.32e-01 | 91.9% | 55.8% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.51 | 37.0 | 3.69e-01 | 88.3% | 72.6% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3655985 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.77 | 46.0 | 4.44e-01 | 88.3% | 52.8% |
| 4936740 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.77 | 42.0 | 5.15e-01 | 87.4% | 84.3% |
| 4101142 | 10.12.1.39 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 | 0.77 | 45.0 | 5.79e-01 | 95.5% | 100.0% |
| 3363456 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.77 | 45.0 | 4.37e-01 | 88.3% | 52.0% |
| 3304949 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.75 | 46.0 | 3.90e-01 | 88.3% | 38.9% |
| 4344444 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.70 | 57.0 | 4.05e-01 | 89.2% | 51.9% |
| 2325655 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.69 | 57.0 | 4.05e-01 | 89.2% | 49.7% |
| 3290022 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.69 | 58.0 | 4.07e-01 | 91.0% | 44.8% |
| 1843188 | 10.12.1.12 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › TauD | 0.69 | 57.0 | 4.30e-01 | 89.2% | 57.2% |
| 3639540 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.68 | 58.0 | 4.30e-01 | 91.0% | 37.4% |
| 2410569 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.68 | 56.0 | 3.95e-01 | 89.2% | 45.8% |
| 3685600 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.68 | 58.0 | 4.19e-01 | 91.9% | 34.7% |
| 3288137 | 10.12.1.66 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › WelO5 | 0.66 | 59.0 | 4.42e-01 | 95.5% | 44.4% |
| 3212201 | 10.4.1.21 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › DUF7591 | 0.65 | 43.0 | 4.42e-01 | 96.4% | 70.5% |
| 3282563 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 50.0 | 4.06e-01 | 89.2% | 44.8% |
| 3220750 | 10.4.1.19 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › Glycoprotein | 0.57 | 43.0 | 4.26e-01 | 92.8% | 75.0% |
| 3256562 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.56 | 42.0 | 3.96e-01 | 97.3% | 64.3% |
| 3785613 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 45.0 | 3.90e-01 | 89.2% | 75.0% |
| 3926732 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.55 | 49.0 | 4.45e-01 | 98.2% | 83.3% |
| 3222920 | 10.32.1.213 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 | 0.55 | 41.0 | 3.90e-01 | 88.3% | 66.2% |
| 4945616 | 11.1.1.1399 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF553 | 0.53 | 43.0 | 4.31e-01 | 87.4% | 93.0% |
| 5041250 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.53 | 38.0 | 3.92e-01 | 87.4% | 80.0% |
| 3605972 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.52 | 38.0 | 3.86e-01 | 89.2% | 77.3% |
| 3266121 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 43.0 | 3.62e-01 | 96.4% | 52.8% |
| 4822676 | 10.25.1.0 ↗ | beta sandwiches › jelly-roll › Jelly-roll domain in peptidase M60 family › Jelly-roll domain in peptidase M60 family | 0.51 | 39.0 | 3.72e-01 | 87.4% | 68.7% |