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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00352
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00352
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 10-113
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p2xA00 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.62 | 47.0 | 4.14e-01 | 100.0% | 52.8% |
| 1aoaA01 | 1.10.418.10 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Calponin-like domain | 0.55 | 44.0 | 4.29e-01 | 100.0% | 78.8% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 37.0 | 3.34e-01 | 70.2% | 88.9% |
| 2ou6A00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.53 | 43.0 | 3.60e-01 | 88.5% | 73.8% |
| 3i6dA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 34.0 | 3.03e-01 | 92.3% | 46.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3403577 | 193.1.1.2 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › Nuf2 | 0.62 | 47.0 | 4.18e-01 | 100.0% | 54.8% |
| 3338341 | 601.42.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Helical bundle in ROQ domain › Helical bundle in ROQ domain › At4g04980_N | 0.59 | 48.0 | 4.59e-01 | 100.0% | 75.2% |
| 3177133 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.58 | 48.0 | 4.25e-01 | 99.0% | 61.9% |
| 3231568 | 7515.1.1.19 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase, Phosphodiest | 0.56 | 50.0 | 3.48e-01 | 98.1% | 87.8% |
| 3175814 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.53 | 42.0 | 3.79e-01 | 83.7% | 88.1% |
| 3991734 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.50 | 38.0 | 3.34e-01 | 78.8% | 88.7% |
D2
high
residues 122-227_261-336
Domain cluster:
rep: IMGVR_UViG_3300035145_002450-3300035145-Ga0373595_0009153_3868_5049__D175-392
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4kq7A01 | 2.60.120.1390 | Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 | 0.69 | 45.0 | 4.72e-01 | 100.0% | 71.6% |
| 4aw7A03 | 2.60.120.1200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.69 | 39.0 | 4.69e-01 | 100.0% | 82.0% |
| 1oh4A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.68 | 43.0 | 4.44e-01 | 100.0% | 65.5% |
| 1pmhX00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.65 | 45.0 | 4.52e-01 | 100.0% | 68.9% |
| 1pm4A00 | 2.60.120.510 | Mainly Beta › Sandwich › Jelly Rolls › Mitogen Ypm | 0.65 | 41.0 | 4.97e-01 | 99.5% | 97.4% |
| 4gwmA02 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 37.0 | 3.95e-01 | 100.0% | 62.8% |
| 4c91A04 | 2.60.120.1620 | Mainly Beta › Sandwich › Jelly Rolls › | 0.64 | 41.0 | 4.05e-01 | 100.0% | 60.3% |
| 3wmqA00 | 2.60.40.2080 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 33.0 | 4.29e-01 | 87.4% | 94.7% |
| 1v8cA02 | 3.30.1370.80 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain | 0.61 | 29.0 | 4.16e-01 | 77.5% | 100.0% |
| 4es8B01 | 2.60.120.1240 | Mainly Beta › Sandwich › Jelly Rolls › | 0.60 | 39.0 | 3.85e-01 | 100.0% | 60.2% |
| 2iuwA00 | 2.60.120.590 | Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like | 0.58 | 33.0 | 3.23e-01 | 96.2% | 49.3% |
| 2id4A02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.56 | 40.0 | 4.58e-01 | 93.4% | 97.8% |
| 6v55A01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.56 | 33.0 | 4.10e-01 | 90.7% | 94.6% |
| 6w0pB01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.54 | 44.0 | 3.75e-01 | 84.6% | 72.7% |
| 4fprB00 | 3.30.70.2910 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 33.0 | 3.92e-01 | 92.3% | 86.7% |
| 1cwpA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.54 | 40.0 | 4.33e-01 | 95.1% | 92.6% |
| 4lr4A02 | 2.60.120.1430 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 40.0 | 4.22e-01 | 94.0% | 84.5% |
| 4rft000 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 43.0 | 4.49e-01 | 94.5% | 94.5% |
| 5k0uB00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 40.0 | 3.66e-01 | 100.0% | 60.9% |
| 3ne5C02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.52 | 30.0 | 3.80e-01 | 87.9% | 98.0% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 37.0 | 4.01e-01 | 100.0% | 85.9% |
| 2vo8A00 | 2.60.40.680 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 36.0 | 4.07e-01 | 97.8% | 94.8% |
| 5e4bA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 44.0 | 4.47e-01 | 90.1% | 96.0% |
| 2bw8A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.51 | 46.0 | 4.32e-01 | 100.0% | 79.2% |
| 1n08A00 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.51 | 27.0 | 2.89e-01 | 83.0% | 56.5% |
| 3ammA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.51 | 46.0 | 4.13e-01 | 100.0% | 80.8% |
| 3lvtA03 | 2.60.40.2210 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 32.0 | 3.77e-01 | 96.2% | 89.9% |
| 4f3lA03 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 31.0 | 3.67e-01 | 70.3% | 90.2% |
| 1p97A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 30.0 | 3.70e-01 | 72.0% | 94.7% |
| 2edmA00 | 2.60.40.2770 | Mainly Beta › Sandwich › Immunoglobulin-like › WSSV envelope protein-like | 0.50 | 35.0 | 3.73e-01 | 72.0% | 96.3% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3462371 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.72 | 45.0 | 4.58e-01 | 100.0% | 64.0% |
| 3833138 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.70 | 45.0 | 4.59e-01 | 100.0% | 65.4% |
| 1070876 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.69 | 45.0 | 4.71e-01 | 100.0% | 71.2% |
| 3979069 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.69 | 40.0 | 4.79e-01 | 100.0% | 85.0% |
| 3588938 | 10.2.1.89 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › PF28589 | 0.66 | 43.0 | 4.47e-01 | 100.0% | 69.4% |
| 4974181 | 331.3.1.74 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 | 0.63 | 34.0 | 4.49e-01 | 78.0% | 96.0% |
| 5039010 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.62 | 41.0 | 4.79e-01 | 100.0% | 93.8% |
| 3275295 | 10.32.1.4 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › EMP24_GP25L | 0.61 | 39.0 | 4.72e-01 | 92.9% | 96.7% |
| 3676352 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.61 | 46.0 | 4.58e-01 | 100.0% | 75.7% |
| 3674231 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.61 | 46.0 | 4.41e-01 | 100.0% | 67.3% |
| 5035505 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.61 | 39.0 | 4.70e-01 | 97.8% | 100.0% |
| 3325991 | 10.32.1.198 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PP2 | 0.60 | 45.0 | 4.40e-01 | 100.0% | 70.0% |
| 3258412 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.60 | 37.0 | 4.20e-01 | 100.0% | 80.7% |
| 2048183 | 10.1.1.50 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Dit-like_CBM2 | 0.58 | 49.0 | 4.53e-01 | 100.0% | 70.4% |
| 3481772 | 331.9.1.4 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Coatomer_g_Cpla | 0.58 | 34.0 | 4.08e-01 | 90.1% | 85.4% |
| 5045890 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.57 | 44.0 | 4.87e-01 | 98.9% | 100.0% |
| 3784499 | 331.3.1.6 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI | 0.56 | 45.0 | 4.48e-01 | 84.1% | 99.5% |
| 3446652 | 331.3.1.40 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1997 | 0.56 | 45.0 | 4.56e-01 | 85.7% | 96.2% |
| 2774101 | 12.3.1.8 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_65N | 0.55 | 44.0 | 3.92e-01 | 84.6% | 80.8% |
| 4992590 | 881.2.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › TM1622-like › TM1622-like | 0.55 | 37.0 | 3.81e-01 | 79.1% | 70.9% |
| 3252755 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.54 | 36.0 | 4.21e-01 | 92.9% | 94.6% |
| 5057736 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.54 | 39.0 | 4.47e-01 | 89.0% | 100.0% |
| 4026379 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 38.0 | 4.19e-01 | 88.5% | 88.0% |
| 3257317 | 331.3.1.31 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF1990 | 0.54 | 44.0 | 4.30e-01 | 87.9% | 79.5% |
| 3620795 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.54 | 34.0 | 3.77e-01 | 79.7% | 77.3% |
| 3697909 | 331.3.1.5 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc | 0.53 | 44.0 | 4.30e-01 | 86.8% | 92.3% |
| 3536617 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.53 | 34.0 | 3.91e-01 | 71.4% | 88.5% |
| 3252754 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.53 | 36.0 | 4.12e-01 | 93.4% | 96.2% |
| 5059640 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.52 | 36.0 | 4.19e-01 | 96.7% | 97.7% |
| 3178618 | 12.3.1.45 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › DUF2264_C | 0.52 | 42.0 | 3.52e-01 | 84.6% | 80.0% |
| 3720665 | 244.1.1.18 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › FAD_binding-like | 0.52 | 35.0 | 3.81e-01 | 92.3% | 80.6% |
| 3451757 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.52 | 41.0 | 4.16e-01 | 84.1% | 92.8% |
| 3728177 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 45.0 | 4.30e-01 | 94.0% | 99.5% |
| 2389248 | 10.2.1.63 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › MCP_V20_C | 0.51 | 44.0 | 4.08e-01 | 94.5% | 87.2% |
| 3630091 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 37.0 | 3.66e-01 | 74.7% | 83.9% |
| 5051273 | 12.3.1.14 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Hepar_II_III | 0.50 | 41.0 | 3.66e-01 | 84.6% | 88.4% |
| 3812918 | 331.3.1.43 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C | 0.50 | 43.0 | 4.11e-01 | 92.9% | 84.1% |
| 3392488 | 223.1.1.29 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 | 0.50 | 31.0 | 3.61e-01 | 70.9% | 85.4% |
| 3252114 | 223.2.1.56 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Afi1, DENND11 | 0.50 | 34.0 | 3.54e-01 | 91.8% | 73.5% |