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PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00366
Bact-VirPH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00366
Identity
- Kingdom:
- phage
Quality
88.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-70
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k0nA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.70 | 51.0 | 4.73e-01 | 97.1% | 61.2% |
| 4m70B00 | 1.10.246.200 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › WPP domain | 0.70 | 48.0 | 4.37e-01 | 75.0% | 53.8% |
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.68 | 50.0 | 4.24e-01 | 100.0% | 49.1% |
| 3if8B02 | 1.20.58.730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.67 | 44.0 | 3.92e-01 | 75.0% | 46.0% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.66 | 50.0 | 4.85e-01 | 100.0% | 71.8% |
| 2ktmA00 | 1.10.790.10 | Mainly Alpha › Orthogonal Bundle › Major Prion Protein › Prion/Doppel protein, beta-ribbon domain | 0.64 | 48.0 | 4.82e-01 | 100.0% | 80.9% |
| 1y6xA00 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.64 | 42.0 | 3.84e-01 | 91.2% | 51.7% |
| 1t33A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.63 | 44.0 | 3.38e-01 | 77.9% | 31.6% |
| 2aj6A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.63 | 42.0 | 3.46e-01 | 98.5% | 39.2% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.62 | 47.0 | 3.38e-01 | 80.9% | 74.4% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.61 | 44.0 | 4.32e-01 | 77.9% | 71.2% |
| 4hkaA02 | 1.10.287.3810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 40.0 | 4.46e-01 | 79.4% | 88.2% |
| 2qytA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 40.0 | 3.53e-01 | 72.1% | 48.5% |
| 2w53B00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 44.0 | 3.42e-01 | 100.0% | 34.7% |
| 152lA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.56 | 46.0 | 3.66e-01 | 98.5% | 50.6% |
| 1kz7A01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 50.0 | 3.60e-01 | 100.0% | 44.0% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 49.0 | 4.09e-01 | 98.5% | 87.2% |
| 2v5cA03 | 1.20.58.460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like | 0.56 | 45.0 | 3.62e-01 | 89.7% | 45.4% |
| 7odyC01 | 1.10.287.1080 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like | 0.55 | 36.0 | 3.35e-01 | 100.0% | 50.0% |
| 1fioA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 47.0 | 3.54e-01 | 100.0% | 62.6% |
| 4ehsA00 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.55 | 45.0 | 3.76e-01 | 91.2% | 93.5% |
| 4dsfA04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 47.0 | 4.11e-01 | 100.0% | 94.5% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.55 | 49.0 | 3.41e-01 | 100.0% | 60.3% |
| 5hyhA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.55 | 44.0 | 3.07e-01 | 98.5% | 82.6% |
| 6qv3A05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 3.71e-01 | 86.8% | 59.1% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.54 | 45.0 | 3.62e-01 | 94.1% | 55.9% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.54 | 35.0 | 3.33e-01 | 97.1% | 56.2% |
| 3dteA01 | 1.10.10.2910 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.54 | 48.0 | 4.04e-01 | 100.0% | 80.3% |
| 1yeyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.54 | 35.0 | 2.93e-01 | 83.8% | 36.3% |
| 3l1nA02 | 1.20.1280.140 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.53 | 45.0 | 4.19e-01 | 100.0% | 74.7% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 37.0 | 2.73e-01 | 76.5% | 88.5% |
| 1l3pA00 | 1.20.120.320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Group V grass pollen allergen | 0.52 | 46.0 | 4.02e-01 | 98.5% | 93.1% |
| 1l8nA03 | 3.90.1330.10 | Alpha Beta › Alpha-Beta Complex › Alpha-d-glucuronidase, C-terminal Domain › Alpha-glucuronidase, C-terminal domain | 0.52 | 46.0 | 3.31e-01 | 100.0% | 71.7% |
| 3qqaA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 42.0 | 3.46e-01 | 100.0% | 47.5% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 43.0 | 3.55e-01 | 100.0% | 57.8% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3925224 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.75 | 47.0 | 3.28e-01 | 100.0% | 21.0% |
| 4026843 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.70 | 51.0 | 5.14e-01 | 77.9% | 82.9% |
| 5028352 | 103.4.1.30 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF28863 | 0.68 | 53.0 | 4.98e-01 | 100.0% | 68.2% |
| 4498171 | 101.11.1.1 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase | 0.67 | 47.0 | 4.64e-01 | 100.0% | 68.0% |
| 3164734 | 589.1.1.2 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › SurA_N_3 | 0.66 | 59.0 | 4.31e-01 | 100.0% | 61.6% |
| 3228717 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.65 | 45.0 | 4.45e-01 | 73.5% | 66.7% |
| 3368923 | 7064.1.1.1 ↗ | alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 | 0.64 | 54.0 | 4.11e-01 | 100.0% | 82.2% |
| 4033873 | 1075.1.1.10 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_5 | 0.63 | 55.0 | 4.09e-01 | 100.0% | 43.5% |
| 3671527 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.63 | 42.0 | 2.99e-01 | 94.1% | 20.2% |
| 3821523 | 5069.1.3.122 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › PLAC8 | 0.63 | 52.0 | 4.43e-01 | 97.1% | 55.7% |
| 3739589 | 141.1.1.0 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases | 0.62 | 48.0 | 3.20e-01 | 92.6% | 21.2% |
| 2972075 | 3759.1.1.1 ↗ | alpha arrays › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antitermination protein Q helical domain › Antiterm | 0.62 | 46.0 | 4.57e-01 | 98.5% | 77.5% |
| 3549234 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.62 | 49.0 | 4.06e-01 | 92.6% | 46.9% |
| 4029677 | 3291.1.1.219 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PF30356 | 0.61 | 51.0 | 4.07e-01 | 100.0% | 58.1% |
| 4014515 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.59 | 45.0 | 4.04e-01 | 100.0% | 58.9% |
| 4023307 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.58 | 43.0 | 4.22e-01 | 100.0% | 76.0% |
| 4025276 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.56 | 48.0 | 3.50e-01 | 100.0% | 57.1% |
| 3855328 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.56 | 40.0 | 3.62e-01 | 77.9% | 54.7% |
| 3271530 | 4310.1.1.1 ↗ | alpha arrays › Dcp2 box A domain › Dcp2 box A domain › Dcp2 box A domain › DCP2 | 0.56 | 41.0 | 3.76e-01 | 100.0% | 60.0% |
| 3266606 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 44.0 | 3.00e-01 | 100.0% | 23.6% |
| 5077460 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 39.0 | 3.95e-01 | 100.0% | 79.4% |
| 4501825 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.55 | 35.0 | 3.46e-01 | 98.5% | 57.3% |
| 3209446 | 632.22.1.131 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › SOG2 | 0.54 | 40.0 | 3.22e-01 | 77.9% | 95.6% |
| 3534586 | 4156.1.1.4 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › HA2_C | 0.54 | 34.0 | 2.50e-01 | 100.0% | 22.7% |
| 4997880 | 304.123.1.1 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like › CGI-121 | 0.54 | 47.0 | 3.44e-01 | 97.1% | 65.1% |
| 3783474 | 604.12.1.71 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › TMD_POM152 | 0.53 | 46.0 | 3.96e-01 | 100.0% | 60.9% |
| 3934929 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.52 | 42.0 | 3.69e-01 | 100.0% | 60.0% |
| 4302483 | 3294.1.1.1 ↗ | alpha complex topology › FAS type I helical domain › FAS type I helical domain › FAS type I helical domain › FAS_I_H | 0.51 | 37.0 | 2.66e-01 | 100.0% | 26.5% |