Back to structures

PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00430

Bact-Vir

PH2015_20_sub10_scaffold_1_prodigal-single.1__X__X__00430

Identity

Kingdom:
phage

Quality

86.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 25-160_289-357
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00082.28 best Peptidase_S8 50.7 2.40e-13 56.6% 41.1%
PF00082.28 Peptidase_S8 22.8 7.40e-05 32.7% 20.2%
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lpaA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.84 82.0 6.67e-01 100.0% 88.5%
1r6vA03 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.84 81.0 6.58e-01 100.0% 79.8%
1wmdA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.83 79.0 6.58e-01 97.1% 89.6%
2oxaA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.83 80.0 6.16e-01 100.0% 80.6%
4i0wB01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.83 79.0 6.49e-01 97.1% 87.5%
4yn3A01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.83 78.0 6.29e-01 97.1% 85.6%
7v7yA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.83 80.0 6.86e-01 99.0% 87.1%
3vv3A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.82 80.0 6.57e-01 100.0% 89.1%
2z2xA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.81 79.0 6.59e-01 99.5% 88.1%
4lvnA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.81 78.0 6.44e-01 100.0% 87.5%
1p8jA01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.81 79.0 6.50e-01 100.0% 85.5%
3qfhC02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.79 77.0 6.15e-01 100.0% 87.7%
3afgA02 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.79 75.0 6.38e-01 97.6% 85.4%
1y9zB01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.79 76.0 6.60e-01 100.0% 85.2%
2ixtA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.79 76.0 6.46e-01 100.0% 88.7%
4aktB00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.78 74.0 6.20e-01 98.5% 87.0%
4hvlA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.78 75.0 5.95e-01 99.5% 80.8%
3zxxA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.78 67.0 6.02e-01 88.3% 86.8%
4zoqM00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.77 74.0 6.12e-01 100.0% 85.6%
2iy9A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.77 73.0 6.18e-01 98.0% 88.3%
1sh7A00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.77 73.0 6.44e-01 98.5% 86.8%
2w2oA00 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.74 70.0 6.21e-01 98.0% 86.9%
3lxuX01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.74 69.0 5.70e-01 97.1% 87.1%
1gt9100 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.71 67.0 5.40e-01 98.5% 83.5%
1xf1A01 3.40.50.200 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain 0.59 55.0 4.55e-01 96.1% 87.9%
1edzA02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 37.0 4.53e-01 94.1% 98.5%
3grfA01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.53 31.0 3.74e-01 95.1% 85.5%
1duvG01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.52 33.0 3.77e-01 91.2% 85.3%
2be7A01 3.40.50.1370 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Aspartate/ornithine carbamoyltransferase 0.50 32.0 3.61e-01 90.7% 84.1%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5039894 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.86 81.0 6.30e-01 97.6% 83.0%
4981809 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.85 78.0 6.32e-01 94.1% 90.6%
4975805 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.85 81.0 5.78e-01 98.0% 91.0%
4997056 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.85 80.0 6.81e-01 97.6% 83.6%
5044850 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 80.0 6.55e-01 97.6% 82.7%
4971082 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.84 80.0 6.62e-01 97.6% 85.2%
5078620 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 80.0 6.54e-01 97.6% 83.9%
5038734 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 81.0 6.65e-01 99.5% 86.2%
4334874 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 81.0 6.56e-01 100.0% 79.1%
3421511 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 81.0 6.34e-01 100.0% 81.0%
1514577 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.84 81.0 6.12e-01 100.0% 84.7%
4403882 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 81.0 6.67e-01 100.0% 83.0%
3380544 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 81.0 6.16e-01 100.0% 77.3%
10999 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 79.0 6.57e-01 97.1% 89.3%
5068108 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 77.0 6.38e-01 95.1% 86.8%
5061670 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 77.0 6.28e-01 94.6% 86.6%
5074783 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 79.0 6.51e-01 97.6% 85.2%
5071849 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 79.0 6.55e-01 97.1% 89.4%
5075070 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 80.0 6.52e-01 99.0% 83.5%
3418566 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 77.0 5.97e-01 95.1% 75.9%
4981530 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.83 76.0 6.24e-01 94.1% 83.3%
4843025 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 75.0 6.26e-01 93.2% 90.4%
3338294 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 79.0 6.30e-01 98.0% 76.4%
5082241 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.83 78.0 6.19e-01 96.6% 83.8%
3191545 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 80.0 6.38e-01 100.0% 82.2%
3259958 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 80.0 6.29e-01 100.0% 72.4%
5062445 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 76.0 6.43e-01 94.6% 89.0%
5043675 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 80.0 6.50e-01 100.0% 86.1%
5018089 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.83 80.0 6.43e-01 100.0% 79.7%
4945483 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 78.0 6.35e-01 97.6% 81.4%
3573926 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 80.0 6.29e-01 100.0% 81.9%
3967399 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 80.0 6.54e-01 100.0% 86.0%
5000233 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.82 78.0 6.26e-01 98.0% 79.4%
4980654 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.82 78.0 5.89e-01 98.0% 76.5%
5001040 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 76.0 6.45e-01 95.1% 87.5%
4549280 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 79.0 6.36e-01 99.5% 82.5%
1087839 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 80.0 6.57e-01 100.0% 89.1%
5068623 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 79.0 6.64e-01 99.5% 81.3%
5040171 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 79.0 6.69e-01 100.0% 82.6%
4477069 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 79.0 6.82e-01 100.0% 85.8%
397525 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.82 79.0 6.70e-01 99.5% 82.2%
4664463 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 78.0 6.41e-01 99.5% 83.2%
4946673 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 77.0 6.34e-01 98.0% 80.3%
4371293 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 79.0 6.84e-01 100.0% 83.1%
4105181 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 79.0 6.50e-01 100.0% 85.2%
4160428 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 79.0 6.73e-01 100.0% 86.3%
3929790 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 79.0 6.06e-01 100.0% 73.5%
5044520 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 75.0 6.29e-01 95.1% 86.7%
4030607 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 78.0 6.62e-01 100.0% 87.1%
3940904 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.81 78.0 6.23e-01 100.0% 80.5%
3481155 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.81 78.0 6.38e-01 100.0% 83.5%
4943797 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 78.0 6.52e-01 100.0% 88.4%
3498066 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 78.0 5.76e-01 100.0% 68.1%
3386239 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 75.0 5.64e-01 96.1% 69.2%
3484117 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.80 76.0 5.75e-01 97.6% 72.7%
5039428 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 76.0 6.10e-01 98.5% 88.5%
3956149 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 77.0 5.98e-01 99.5% 78.0%
4022408 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 78.0 6.09e-01 100.0% 72.6%
3472396 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 75.0 5.72e-01 97.6% 72.7%
4029475 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 77.0 6.46e-01 100.0% 84.7%
3809746 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 75.0 6.09e-01 97.6% 73.4%
5040513 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.80 77.0 6.65e-01 100.0% 84.1%
4380867 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.79 77.0 6.02e-01 100.0% 82.6%
4011166 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.79 76.0 6.32e-01 100.0% 88.8%
3246035 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.79 75.0 6.24e-01 98.0% 80.9%
5040395 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.79 74.0 6.06e-01 97.6% 82.0%
4995529 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.79 76.0 6.04e-01 99.5% 84.9%
4408513 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.78 76.0 6.00e-01 100.0% 86.4%
1144384 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.78 75.0 5.88e-01 99.5% 77.2%
5041634 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.78 73.0 6.21e-01 96.1% 84.7%
4014875 2499.1.1.0 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like 0.78 74.0 6.44e-01 98.5% 86.5%
4360057 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.77 75.0 6.22e-01 100.0% 85.8%
4950457 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.77 73.0 6.28e-01 97.1% 86.8%
5044492 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.77 74.0 6.05e-01 99.5% 85.6%
4837365 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.76 73.0 6.52e-01 99.0% 89.7%
5068611 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.76 72.0 5.93e-01 97.1% 92.7%
5057427 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.76 74.0 6.25e-01 99.5% 79.7%
5045808 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.76 70.0 5.77e-01 94.6% 86.4%
4671694 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.76 72.0 6.16e-01 99.5% 84.8%
3179580 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.72 67.0 5.41e-01 97.6% 83.0%
5009281 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.72 67.0 5.46e-01 98.0% 96.9%
3728417 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.70 66.0 5.13e-01 97.6% 85.3%
3303667 2499.1.1.1 a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.60 56.0 4.69e-01 95.6% 72.4%
D2 medium residues 161-211_268-288
PDB
Domain cluster: representative
D3 medium residues 394-478_610-644
PDB
Domain cluster: representative
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273636 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.56 27.0 3.46e-01 81.7% 81.5%
4856794 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.54 27.0 3.27e-01 100.0% 72.7%
3646089 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.54 27.0 3.24e-01 73.3% 71.2%
3675745 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.54 27.0 3.31e-01 76.7% 76.7%
D4 medium residues 479-609
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1bh3A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.78 61.0 4.59e-01 98.5% 36.7%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.75 69.0 5.38e-01 98.5% 51.3%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 69.0 4.43e-01 100.0% 40.6%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.73 68.0 5.74e-01 99.2% 66.3%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.72 67.0 4.36e-01 100.0% 37.7%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.71 66.0 4.16e-01 100.0% 33.4%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.71 66.0 4.23e-01 99.2% 37.0%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.70 65.0 4.51e-01 100.0% 33.8%
3vy8X00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.70 64.0 4.69e-01 100.0% 43.7%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.69 62.0 4.67e-01 95.4% 58.4%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.68 63.0 4.00e-01 99.2% 37.1%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.68 63.0 4.58e-01 100.0% 41.5%
2ns9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 46.0 4.45e-01 97.7% 62.2%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.67 61.0 4.01e-01 99.2% 40.4%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 61.0 4.15e-01 100.0% 39.5%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.64 59.0 5.54e-01 100.0% 91.6%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.63 57.0 3.72e-01 100.0% 25.2%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 41.0 4.50e-01 89.3% 80.2%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.62 58.0 4.94e-01 100.0% 76.0%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.61 53.0 5.33e-01 100.0% 89.6%
6serA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 3.98e-01 96.9% 47.4%
4r80A00 3.10.450.630 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 34.0 4.21e-01 95.4% 93.4%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 54.0 5.22e-01 99.2% 90.5%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 51.0 4.93e-01 94.7% 86.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.58 52.0 4.62e-01 99.2% 69.4%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.58 52.0 5.05e-01 98.5% 89.1%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.58 53.0 4.85e-01 100.0% 85.5%
2e3nA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.04e-01 95.4% 53.2%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 52.0 4.91e-01 99.2% 86.5%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 50.0 4.53e-01 100.0% 98.9%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.55 45.0 3.95e-01 90.8% 86.7%
1n9eA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.54 49.0 3.27e-01 99.2% 62.2%
1a2vA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.53 48.0 3.35e-01 100.0% 85.0%
2fpnA01 3.30.2030.10 Alpha Beta › 2-Layer Sandwich › TBP-like › YwmB-like 0.51 36.0 3.53e-01 96.9% 67.1%
1vl4A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.51 41.0 3.58e-01 87.0% 79.0%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 46.0 4.34e-01 96.2% 86.8%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965061 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.80 75.0 5.88e-01 100.0% 66.5%
3969607 5084.1.1.11 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.79 74.0 5.40e-01 98.5% 58.1%
3391818 3070.2.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.79 51.0 5.86e-01 85.5% 86.9%
4318781 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.79 74.0 5.43e-01 100.0% 59.7%
3385986 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.78 59.0 5.06e-01 97.7% 52.0%
3964119 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.76 71.0 4.95e-01 99.2% 60.0%
3976425 5084.5.1.8 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › KdgM 0.76 69.0 5.75e-01 100.0% 59.5%
4244652 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.73 67.0 4.67e-01 100.0% 44.9%
2410295 5084.5.4.3 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › PorV 0.73 66.0 5.36e-01 95.4% 65.8%
4865042 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.72 67.0 4.42e-01 99.2% 42.3%
4339977 5084.5.1.1 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_1 0.72 67.0 4.70e-01 100.0% 44.2%
3387592 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.72 67.0 4.79e-01 100.0% 38.4%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.71 66.0 5.33e-01 100.0% 54.6%
4241521 5084.5.1.11 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_4 0.70 65.0 4.83e-01 100.0% 42.3%
4664957 5084.5.2.0 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like 0.70 65.0 4.52e-01 100.0% 42.1%
200993 5084.9.1.1 beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.69 62.0 4.67e-01 95.4% 58.4%
2841805 5084.5.3.3 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › MtrB_PioB 0.69 63.0 4.01e-01 100.0% 31.6%
3976326 5084.3.1.2 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › IAT_beta 0.69 62.0 5.54e-01 97.7% 70.0%
4098598 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.68 61.0 3.98e-01 95.4% 33.8%
3838109 5084.9.1.1 beta barrels › Outer membrane meander beta-barrels › Lipid A deacylase LpxR › Lipid A deacylase LpxR › LpxR 0.68 61.0 5.07e-01 99.2% 81.3%
3470169 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.67 62.0 4.32e-01 100.0% 34.6%
4064323 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.67 61.0 4.28e-01 100.0% 40.1%
4533056 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.66 62.0 4.26e-01 100.0% 39.3%
3969715 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.65 60.0 3.94e-01 100.0% 31.3%
3594654 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.65 59.0 4.26e-01 100.0% 41.6%
3611705 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.64 59.0 4.23e-01 100.0% 41.9%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.64 59.0 5.51e-01 100.0% 87.5%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.64 59.0 5.39e-01 100.0% 87.1%
3387633 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.64 59.0 4.35e-01 100.0% 45.7%
3840054 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.62 52.0 5.14e-01 88.5% 90.0%
3717466 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.62 57.0 5.02e-01 100.0% 86.8%
4130771 5084.1.1.10 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OMP_b-brl 0.62 57.0 5.05e-01 100.0% 86.5%
3838622 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.61 57.0 4.75e-01 99.2% 86.9%
3925444 5087.3.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C 0.61 51.0 4.31e-01 91.6% 55.0%
4116729 5084.1.1.6 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.60 56.0 5.09e-01 100.0% 83.5%
3165475 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.59 53.0 4.98e-01 97.7% 91.8%
4332907 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.58 49.0 3.54e-01 90.8% 59.2%
3875809 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.58 52.0 4.85e-01 98.5% 78.8%
3534691 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.55 50.0 4.65e-01 100.0% 83.0%
4991332 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.53 43.0 3.68e-01 86.3% 75.8%
3779854 7026.1.1.19 beta meanders › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › N-terminal region of lipid transporter Vps13 › VPS13_M 0.53 48.0 3.15e-01 100.0% 31.7%
3789935 3369.1.1.0 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 0.53 42.0 3.73e-01 96.9% 58.9%
3891753 3369.1.1.1 beta meanders › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › lysosome-associated membrane protein LAMP-3 › Lamp2-like_luminal 0.52 47.0 4.11e-01 100.0% 73.0%
4946441 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 43.0 3.70e-01 90.1% 77.2%
4670128 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.51 44.0 3.67e-01 94.7% 66.1%