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PH2015_22_scaffold_1_prodigal-single.1__X__X__00113
Bact-VirPH2015_22_scaffold_1_prodigal-single.1__X__X__00113
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 5-173
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 25.0 | 4.93e-01 | 94.7% | 100.0% |
| 6qelA01 | 1.10.860.10 | Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A | 0.57 | 45.0 | 4.73e-01 | 100.0% | 94.7% |
| 1t98A02 | 1.20.58.590 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain | 0.55 | 34.0 | 3.46e-01 | 91.1% | 62.0% |
| 4o6yB00 | 1.20.120.1770 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.53 | 45.0 | 4.15e-01 | 94.1% | 71.6% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 36.0 | 3.91e-01 | 100.0% | 81.9% |
| 8ipqB01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.51 | 37.0 | 3.14e-01 | 87.0% | 44.5% |
| 7w9wA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 38.0 | 3.28e-01 | 94.1% | 50.0% |
| 4u72A01 | 1.20.58.480 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 33.0 | 3.04e-01 | 100.0% | 49.1% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 36.0 | 3.79e-01 | 100.0% | 81.3% |
| 7f16R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.50 | 43.0 | 3.67e-01 | 93.5% | 56.7% |
| 8iprA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.50 | 36.0 | 2.92e-01 | 89.9% | 40.2% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4928931 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.74 | 32.0 | 3.57e-01 | 94.1% | 49.3% |
| 4218590 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.69 | 52.0 | 5.63e-01 | 100.0% | 95.0% |
| 3947982 | 507.1.1.0 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related | 0.68 | 55.0 | 5.84e-01 | 100.0% | 96.0% |
| 4494820 | 507.1.1.1 ↗ | alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB | 0.67 | 54.0 | 5.73e-01 | 99.4% | 96.0% |
| 3256857 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 34.0 | 2.78e-01 | 91.1% | 33.3% |
| 3799526 | 5001.1.1.3 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_2 | 0.54 | 44.0 | 3.58e-01 | 94.1% | 46.3% |
| 4026688 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.53 | 38.0 | 3.26e-01 | 91.7% | 45.7% |
| 3859811 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.53 | 46.0 | 3.64e-01 | 93.5% | 47.2% |
| 3553862 | 4177.1.1.61 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › PLC-beta_C | 0.52 | 41.0 | 3.57e-01 | 83.4% | 83.5% |
D2
medium
residues 232-376
Domain cluster:
rep: NC_047796.1__YP_009788369.1__HOR47_gp057__00057__D561-602_618-705
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20307.5 best | divDNAB | 81.8 | 5.40e-23 | 98.6% | 37.1% |
CATH (44)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8dtpC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.81 | 75.0 | 6.10e-01 | 100.0% | 55.5% |
| 3bh0A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.78 | 70.0 | 5.46e-01 | 100.0% | 48.2% |
| 1cr2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 64.0 | 5.33e-01 | 100.0% | 52.3% |
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 55.0 | 4.52e-01 | 100.0% | 55.1% |
| 1amuA01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 35.0 | 3.34e-01 | 80.0% | 47.9% |
| 1t8sA02 | 3.40.50.1580 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain | 0.59 | 45.0 | 3.54e-01 | 78.6% | 69.9% |
| 7wgrA03 | 3.40.50.11610 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain | 0.59 | 34.0 | 3.56e-01 | 79.3% | 61.1% |
| 3jzjA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.59 | 33.0 | 3.03e-01 | 84.1% | 40.1% |
| 7kx9A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 35.0 | 3.58e-01 | 84.8% | 59.7% |
| 2w42B01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 36.0 | 3.53e-01 | 85.5% | 55.1% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 38.0 | 3.35e-01 | 85.5% | 44.1% |
| 5gvrA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 53.0 | 4.47e-01 | 100.0% | 74.8% |
| 3nutC01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.57 | 34.0 | 3.81e-01 | 100.0% | 75.4% |
| 3et4A00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.57 | 50.0 | 4.19e-01 | 95.2% | 92.2% |
| 3ndcA01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.57 | 36.0 | 3.97e-01 | 100.0% | 80.5% |
| 6de8A01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.56 | 37.0 | 3.76e-01 | 87.6% | 66.7% |
| 3eccA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 43.0 | 4.23e-01 | 82.8% | 99.4% |
| 4rxtA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 36.0 | 3.74e-01 | 88.3% | 69.3% |
| 1d2nA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 43.0 | 4.05e-01 | 82.1% | 93.0% |
| 7xexC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 49.0 | 4.43e-01 | 100.0% | 71.3% |
| 2c2xA02 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.54 | 37.0 | 3.63e-01 | 87.6% | 63.6% |
| 8ea4D01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 3.98e-01 | 77.9% | 100.0% |
| 1zxxA02 | 3.40.50.460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphofructokinase domain | 0.54 | 40.0 | 4.27e-01 | 83.4% | 88.8% |
| 3cr8C02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.54 | 35.0 | 3.18e-01 | 75.9% | 47.0% |
| 2h00B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 43.0 | 3.78e-01 | 84.1% | 67.1% |
| 7zveA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 4.25e-01 | 95.2% | 78.9% |
| 3zm6A03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.53 | 43.0 | 4.28e-01 | 89.7% | 82.1% |
| 4fypB00 | 3.40.50.1000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like | 0.53 | 49.0 | 4.23e-01 | 100.0% | 95.5% |
| 8cjhA01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.53 | 47.0 | 3.45e-01 | 100.0% | 94.2% |
| 4c5cA01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 29.0 | 3.57e-01 | 80.0% | 89.3% |
| 4pyrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 37.0 | 4.00e-01 | 82.8% | 86.7% |
| 1o9gA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 43.0 | 3.85e-01 | 88.3% | 85.4% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 36.0 | 3.64e-01 | 87.6% | 69.7% |
| 7x0hC01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 40.0 | 4.15e-01 | 93.8% | 85.4% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 42.0 | 3.94e-01 | 95.2% | 71.0% |
| 5irmC01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 3.52e-01 | 81.4% | 85.0% |
| 4ccsA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 36.0 | 3.91e-01 | 86.2% | 85.2% |
| 5f2kB02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.52 | 45.0 | 4.03e-01 | 97.2% | 80.4% |
| 3sg0A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 39.0 | 3.87e-01 | 93.1% | 75.7% |
| 4b3fX03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 42.0 | 3.78e-01 | 100.0% | 63.9% |
| 5fbhA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 40.0 | 3.70e-01 | 95.2% | 65.2% |
| 3vs8H00 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.51 | 45.0 | 3.38e-01 | 100.0% | 87.0% |
| 1dbqA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 33.0 | 3.41e-01 | 76.6% | 70.1% |
| 6fwrA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 45.0 | 4.08e-01 | 100.0% | 89.0% |
ECOD (56)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942586 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.86 | 76.0 | 6.10e-01 | 100.0% | 51.5% |
| 3979830 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 73.0 | 4.98e-01 | 100.0% | 29.9% |
| 2554159 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.81 | 73.0 | 5.64e-01 | 100.0% | 46.6% |
| None | — | 0.81 | 73.0 | 4.96e-01 | 100.0% | 29.9% | |
| 3589232 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 72.0 | 4.93e-01 | 100.0% | 31.2% |
| 4522132 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.81 | 73.0 | 4.96e-01 | 100.0% | 30.1% |
| 3512712 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.78 | 69.0 | 4.53e-01 | 100.0% | 24.9% |
| 3081874 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.78 | 72.0 | 5.63e-01 | 100.0% | 49.6% |
| 4859486 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.70 | 60.0 | 5.92e-01 | 100.0% | 85.7% |
| 4979988 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.70 | 41.0 | 4.51e-01 | 96.6% | 70.0% |
| 3412811 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 62.0 | 5.29e-01 | 100.0% | 63.0% |
| 3457573 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.66 | 60.0 | 4.77e-01 | 100.0% | 50.0% |
| None | — | 0.65 | 60.0 | 4.72e-01 | 100.0% | 50.0% | |
| 4025136 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 61.0 | 4.63e-01 | 100.0% | 49.2% |
| 3173535 | 2004.1.1.239 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SLFN-g3_helicase | 0.64 | 51.0 | 4.42e-01 | 83.4% | 93.5% |
| 5029061 | 7592.1.1.3 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › DUF6293_N | 0.62 | 39.0 | 4.09e-01 | 82.1% | 69.2% |
| 4278027 | 7528.1.1.1 ↗ | a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I | 0.61 | 41.0 | 3.95e-01 | 87.6% | 59.4% |
| 4984498 | 7592.1.1.0 ↗ | a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains | 0.60 | 39.0 | 4.09e-01 | 83.4% | 70.7% |
| 5011999 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.60 | 33.0 | 3.35e-01 | 79.3% | 51.4% |
| 3878424 | 2007.1.6.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Aminoacid dehydrogenase-like, N-terminal domain › THF_DHG_CYH | 0.58 | 38.0 | 3.93e-01 | 88.3% | 67.9% |
| 3649129 | 2004.1.1.462 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 | 0.58 | 46.0 | 4.15e-01 | 83.4% | 100.0% |
| 3610709 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 45.0 | 3.91e-01 | 82.8% | 95.9% |
| 3809993 | 2004.1.1.462 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NBD_SMAX1 | 0.57 | 46.0 | 3.49e-01 | 84.8% | 58.8% |
| 3713154 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.57 | 40.0 | 4.05e-01 | 84.8% | 71.0% |
| 3583537 | 2004.1.1.432 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA, Rad17 | 0.56 | 44.0 | 3.72e-01 | 82.1% | 93.6% |
| 5057919 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.56 | 44.0 | 3.65e-01 | 83.4% | 65.1% |
| 3429490 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.56 | 44.0 | 4.03e-01 | 82.8% | 88.4% |
| 5050127 | 2004.1.1.196 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_22 | 0.56 | 43.0 | 3.83e-01 | 80.7% | 85.4% |
| 3383610 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.55 | 42.0 | 4.06e-01 | 80.7% | 97.0% |
| 3990161 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.55 | 46.0 | 4.40e-01 | 90.3% | 90.0% |
| 3816371 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.55 | 42.0 | 4.02e-01 | 80.0% | 95.8% |
| 3428807 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.54 | 43.0 | 3.98e-01 | 83.4% | 94.1% |
| 3667227 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.54 | 50.0 | 4.11e-01 | 100.0% | 61.2% |
| 5003521 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 38.0 | 4.36e-01 | 79.3% | 100.0% |
| 3443027 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.54 | 42.0 | 4.05e-01 | 81.4% | 97.0% |
| 5082551 | 7581.1.1.0 ↗ | a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like | 0.54 | 42.0 | 4.31e-01 | 82.1% | 89.6% |
| 3402837 | 2004.1.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA | 0.54 | 43.0 | 3.90e-01 | 83.4% | 87.9% |
| 3971940 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 49.0 | 4.28e-01 | 100.0% | 72.3% |
| 3904589 | 2006.1.6.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_4 | 0.54 | 40.0 | 3.46e-01 | 77.9% | 78.7% |
| 159534 | 7570.1.1.1 ↗ | a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C | 0.53 | 43.0 | 4.22e-01 | 89.7% | 78.5% |
| 3653830 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.53 | 40.0 | 3.94e-01 | 79.3% | 95.0% |
| 3376508 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.53 | 45.0 | 2.84e-01 | 89.7% | 36.7% |
| 3818078 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.53 | 42.0 | 4.00e-01 | 84.1% | 94.1% |
| 3704950 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 45.0 | 4.41e-01 | 100.0% | 85.6% |
| 3594626 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 41.0 | 3.85e-01 | 82.1% | 92.0% |
| 3890543 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 42.0 | 3.45e-01 | 85.5% | 77.8% |
| 1253201 | 2007.1.2.13 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_6 | 0.52 | 42.0 | 4.31e-01 | 95.2% | 89.9% |
| 3377750 | 2004.1.1.91 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › LpxK | 0.52 | 36.0 | 3.04e-01 | 71.0% | 69.4% |
| 4020778 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 41.0 | 3.87e-01 | 83.4% | 87.1% |
| 4598421 | 7502.1.1.1 ↗ | a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon | 0.51 | 28.0 | 2.99e-01 | 81.4% | 56.9% |
| 3458089 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.51 | 43.0 | 3.88e-01 | 89.0% | 88.7% |
| 3650238 | 2004.1.1.56 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC | 0.51 | 41.0 | 4.23e-01 | 84.1% | 96.3% |
| 2141918 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.51 | 36.0 | 3.37e-01 | 98.6% | 57.5% |
| 3965626 | 2004.1.1.194 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C_2 | 0.51 | 46.0 | 4.30e-01 | 100.0% | 87.8% |
| 3870276 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.50 | 45.0 | 3.73e-01 | 100.0% | 77.0% |
| 3701322 | 7514.1.1.1 ↗ | a/b three-layered sandwiches › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › Ferredoxin reductase-like, C-terminal NADP-linked domain › NAD_binding_1 | 0.50 | 44.0 | 4.07e-01 | 96.6% | 90.8% |
D3
medium
residues 377-508
Domain cluster:
rep: term2_saliva_scaffold_0_prodigal-single.1__X__X__00082__D408-506
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF20307.5 best | divDNAB | 76.0 | 3.30e-21 | 96.2% | 32.6% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.55 | 26.0 | 3.24e-01 | 77.3% | 71.1% |
| 4ztkA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.54 | 38.0 | 3.01e-01 | 71.2% | 64.2% |
| 3pijA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.52 | 38.0 | 2.82e-01 | 76.5% | 79.4% |
| 4gm6A00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 42.0 | 3.23e-01 | 89.4% | 53.8% |
| 2hqsA01 | 3.40.50.10070 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TolB, N-terminal domain | 0.50 | 38.0 | 3.72e-01 | 78.8% | 83.1% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3270076 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.84 | 53.0 | 4.06e-01 | 77.3% | 30.9% |
| 4107401 | 2004.1.1.790 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GvpD_P-loop | 0.81 | 49.0 | 4.00e-01 | 87.1% | 34.8% |
| 4989686 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.80 | 48.0 | 4.25e-01 | 86.4% | 42.7% |
| 4585462 | 2004.1.1.200 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_25 | 0.79 | 58.0 | 4.42e-01 | 90.2% | 34.8% |
| 5065858 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 50.0 | 3.99e-01 | 86.4% | 35.9% |
| 4989676 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.75 | 47.0 | 4.09e-01 | 85.6% | 43.2% |
| 5007980 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.75 | 49.0 | 4.09e-01 | 87.1% | 39.1% |
| 5054433 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.65 | 26.0 | 4.26e-01 | 87.1% | 100.0% |
| 3188993 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.61 | 55.0 | 4.04e-01 | 94.7% | 40.7% |
| 3217076 | 243.1.1.75 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 | 0.61 | 29.0 | 3.14e-01 | 79.5% | 51.3% |
| 5022726 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.59 | 22.0 | 3.49e-01 | 72.7% | 88.0% |
| 3744332 | 9.15.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › TLDC domain of oxidation resistance protein 2 › TLDC domain of oxidation resistance protein 2 › TLD | 0.54 | 42.0 | 3.83e-01 | 84.1% | 79.8% |
| 3443030 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 27.0 | 3.36e-01 | 74.2% | 82.5% |
| 3684661 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.51 | 29.0 | 2.88e-01 | 71.2% | 47.9% |
| 4276865 | 7503.1.1.3 ↗ | a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › TolB_N | 0.51 | 38.0 | 3.62e-01 | 78.8% | 86.3% |
| 3501270 | 2004.1.1.114 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MukB,SbcC_Walker_B | 0.51 | 38.0 | 2.66e-01 | 76.5% | 83.4% |
| 3409307 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.50 | 35.0 | 3.27e-01 | 74.2% | 57.6% |