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PH2015_22_scaffold_1_prodigal-single.1__X__X__00128

Bact-Vir

PH2015_22_scaffold_1_prodigal-single.1__X__X__00128

Identity

Kingdom:
phage

Quality

72.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 171-259
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3draA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.69 61.0 4.26e-01 100.0% 37.1%
2j9qB00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.65 57.0 4.12e-01 100.0% 60.2%
2vsyA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.64 56.0 4.86e-01 98.9% 65.5%
4eadA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.62 52.0 4.91e-01 93.3% 94.4%
3b4uA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 47.0 3.36e-01 95.5% 41.8%
1z3xA01 1.25.40.620 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.55 48.0 4.04e-01 98.9% 60.6%
2mw2A00 1.20.1280.40 Mainly Alpha › Up-down Bundle › Monooxygenase › HHA 0.55 37.0 4.11e-01 86.5% 91.0%
2w0gA00 1.20.58.610 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain 0.55 43.0 3.79e-01 84.3% 79.1%
3ntvA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.36e-01 91.0% 55.2%
4c0aA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.52 40.0 4.15e-01 94.4% 92.6%
3g2eB00 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.51 35.0 2.82e-01 70.8% 87.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3432915 109.4.1.883 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR+PPR_2 0.66 56.0 4.39e-01 96.6% 52.0%
3223407 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.65 56.0 5.00e-01 100.0% 92.6%
3454870 109.4.1.240 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_long 0.64 55.0 4.61e-01 97.8% 81.2%
1495169 109.4.1.272 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Yme1-like_N 0.62 48.0 4.88e-01 84.3% 88.6%
3212871 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.61 53.0 4.23e-01 98.9% 52.1%
3214086 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.61 48.0 3.56e-01 96.6% 31.2%
3245003 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 52.0 4.28e-01 98.9% 55.4%
3213514 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.60 47.0 4.09e-01 94.4% 54.3%
3716855 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 53.0 3.54e-01 100.0% 45.9%
3225808 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.58 51.0 4.33e-01 100.0% 63.3%
3230704 226.1.1.1 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › BTB 0.55 45.0 4.39e-01 98.9% 83.0%
3725613 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.51 37.0 3.58e-01 77.5% 92.4%