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PH2015_22_scaffold_1_prodigal-single.1__X__X__00132
Bact-VirPH2015_22_scaffold_1_prodigal-single.1__X__X__00132
Identity
- Kingdom:
- phage
Quality
56.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 62-119
D2
medium
residues 172-250
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1auuA00 | 2.30.24.10 | Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain | 0.58 | 31.0 | 3.54e-01 | 70.9% | 70.9% |
| 1mgtA01 | 3.30.160.70 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain | 0.55 | 36.0 | 3.57e-01 | 86.1% | 61.4% |
| 3p0cA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.54 | 37.0 | 3.37e-01 | 72.2% | 88.3% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 45.0 | 3.67e-01 | 93.7% | 51.0% |
| 4ntqB00 | 3.30.2450.20 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.52 | 42.0 | 3.51e-01 | 91.1% | 93.8% |
| 1d5aA01 | 3.30.342.10 | Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 | 0.51 | 44.0 | 3.65e-01 | 100.0% | 94.0% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 34.0 | 3.54e-01 | 82.3% | 74.6% |
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.51 | 40.0 | 2.82e-01 | 92.4% | 62.2% |
| 1srqA01 | 3.30.1120.160 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.51 | 33.0 | 2.85e-01 | 89.9% | 37.7% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3473908 | 220.1.1.157 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PF29715 | 0.57 | 36.0 | 2.89e-01 | 88.6% | 30.9% |
| 4141218 | 4099.1.1.6 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD2 | 0.56 | 38.0 | 3.87e-01 | 70.9% | 96.2% |
| 3250605 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.56 | 38.0 | 3.37e-01 | 72.2% | 88.8% |
| 4151237 | 2484.2.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › MGMT_N | 0.55 | 38.0 | 3.64e-01 | 86.1% | 61.1% |
| 5080802 | 252.2.1.0 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like | 0.55 | 39.0 | 4.33e-01 | 77.2% | 98.3% |
| 3610916 | 2484.2.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain | 0.54 | 38.0 | 3.56e-01 | 73.4% | 100.0% |
| 3864474 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 42.0 | 3.46e-01 | 94.9% | 95.8% |
| 3554073 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 37.0 | 3.25e-01 | 77.2% | 83.8% |
| 3587376 | 386.1.1.344 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Arm-DNA-bind_4 | 0.51 | 34.0 | 3.86e-01 | 93.7% | 98.2% |
| 3696963 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 2.46e-01 | 92.4% | 14.7% |
| 4020093 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 45.0 | 3.79e-01 | 100.0% | 89.6% |
| 3408369 | 284.1.3.4 ↗ | a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK | 0.50 | 34.0 | 3.46e-01 | 91.1% | 73.3% |