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PH2015_22_scaffold_1_prodigal-single.1__X__X__00184
Bact-VirPH2015_22_scaffold_1_prodigal-single.1__X__X__00184
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-158
Domain cluster:
rep: LC680885.1__BDE75676.1__X__00138__D6-124
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vlaA03 | 1.10.10.2090 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.57 | 26.0 | 2.85e-01 | 80.8% | 50.0% |
| 2djoA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 23.0 | 2.90e-01 | 76.2% | 60.7% |
| 3e0fA02 | 1.10.150.650 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.54 | 20.0 | 2.78e-01 | 71.5% | 64.9% |
| 3tdvA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.53 | 46.0 | 4.20e-01 | 97.4% | 97.6% |
| 6azyA01 | 1.10.1780.10 | Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain | 0.51 | 31.0 | 3.36e-01 | 98.0% | 68.7% |
| 4futA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.51 | 30.0 | 3.39e-01 | 80.8% | 79.0% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 26.0 | 3.10e-01 | 77.5% | 71.8% |
| 4b45A01 | 3.40.50.1440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain | 0.50 | 38.0 | 3.39e-01 | 79.5% | 94.9% |
D2
high
residues 166-352
Domain cluster:
rep: term6_stool_scaffold_5_prodigal-single.1__X__X__00135__D127-319
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25614.2 best | PhiKZ_VTX | 29.5 | 6.20e-07 | 96.8% | 45.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ckdA02 | 1.20.58.360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Shigella T3SS effector IpaH defines | 0.65 | 32.0 | 3.82e-01 | 96.3% | 67.7% |
| 3fbzA01 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.62 | 32.0 | 4.24e-01 | 75.9% | 91.2% |
| 3f2eA00 | 1.20.58.800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 28.0 | 4.04e-01 | 70.6% | 98.8% |
| 4an8A02 | 1.10.132.100 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › | 0.52 | 31.0 | 3.75e-01 | 76.5% | 89.3% |
| 7fciA01 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.52 | 38.0 | 3.33e-01 | 75.9% | 81.7% |
| 1cpcA00 | 1.10.490.20 | Mainly Alpha › Orthogonal Bundle › Globin-like › Phycocyanins | 0.51 | 31.0 | 3.36e-01 | 73.8% | 69.1% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 28.0 | 3.17e-01 | 99.5% | 66.9% |
| 3zuxA00 | 1.20.1530.20 | Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › | 0.51 | 38.0 | 3.29e-01 | 77.5% | 76.3% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3513473 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.66 | 37.0 | 4.06e-01 | 89.8% | 66.7% |
| 4962839 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.56 | 46.0 | 4.08e-01 | 88.2% | 97.9% |
| 3914125 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.55 | 34.0 | 3.78e-01 | 74.3% | 77.9% |
| 5060820 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 48.0 | 3.57e-01 | 97.3% | 93.0% |
| 4144025 | 129.1.1.9 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › NAD_Gly3P_dh_C | 0.51 | 35.0 | 3.77e-01 | 88.8% | 82.6% |
| 5067570 | 131.1.1.14 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › Cas3_HD | 0.51 | 42.0 | 4.26e-01 | 88.8% | 97.3% |
| 4969150 | 141.1.1.3 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › UbiA | 0.51 | 41.0 | 3.57e-01 | 86.1% | 94.9% |
| 4579760 | 141.1.1.9 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › YwiC | 0.50 | 41.0 | 3.81e-01 | 86.6% | 95.0% |