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PH2015_22_scaffold_1_prodigal-single.1__X__X__00227

Bact-Vir

PH2015_22_scaffold_1_prodigal-single.1__X__X__00227

Identity

Kingdom:
phage

Quality

79.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-85
PDB
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.83 58.0 6.45e-01 88.5% 91.9%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.73 50.0 4.07e-01 80.8% 39.9%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.72 49.0 5.03e-01 79.5% 72.4%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.70 52.0 3.97e-01 79.5% 35.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.69 56.0 4.76e-01 87.2% 68.0%
4eziA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.68 47.0 3.24e-01 73.1% 40.8%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.67 43.0 3.46e-01 80.8% 34.0%
2nykA01 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.66 49.0 3.87e-01 76.9% 75.7%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.66 52.0 4.50e-01 88.5% 54.0%
4e6fA00 3.30.530.80 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.64 43.0 3.32e-01 70.5% 37.4%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 47.0 4.29e-01 83.3% 59.4%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 43.0 3.53e-01 70.5% 41.1%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.62 54.0 4.43e-01 93.6% 90.4%
2v14A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.62 51.0 4.28e-01 93.6% 52.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 4.02e-01 76.9% 71.8%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.60 43.0 3.76e-01 88.5% 49.2%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 46.0 4.14e-01 88.5% 57.8%
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 48.0 4.26e-01 89.7% 66.7%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 44.0 3.99e-01 89.7% 57.7%
3pijA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.16e-01 92.3% 33.7%
3w1hA01 3.90.1150.110 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 45.0 3.50e-01 85.9% 48.1%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 36.0 3.70e-01 71.8% 62.8%
3ci0J01 3.10.610.10 Alpha Beta › Roll › Pili subunits › GSPII I/J protein-like 0.58 43.0 3.97e-01 80.8% 71.2%
2rfrA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 44.0 3.54e-01 82.1% 43.5%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.21e-01 100.0% 32.1%
1jpdX01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 44.0 4.05e-01 82.1% 81.8%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 4.06e-01 80.8% 78.0%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 40.0 3.32e-01 100.0% 41.5%
8in8C01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 40.0 2.79e-01 75.6% 40.8%
4ibnA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 47.0 3.56e-01 93.6% 93.1%
1r0mA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.61e-01 82.1% 66.9%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 44.0 3.84e-01 87.2% 75.4%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.55 49.0 3.49e-01 98.7% 67.4%
2ckfB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.22e-01 80.8% 88.8%
1gesA03 3.30.390.30 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain 0.55 43.0 3.83e-01 85.9% 62.8%
4gxbA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 37.0 3.46e-01 71.8% 60.6%
2basA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 38.0 3.33e-01 93.6% 48.3%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 39.0 3.37e-01 100.0% 46.9%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 40.0 2.93e-01 80.8% 82.5%
4hj1A01 2.60.98.50 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › 0.53 41.0 3.28e-01 84.6% 71.1%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 42.0 3.10e-01 84.6% 83.6%
3gneB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 42.0 2.99e-01 87.2% 63.2%
5n1tA03 3.90.760.10 Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain 0.52 32.0 3.33e-01 88.5% 66.2%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 47.0 3.54e-01 98.7% 61.0%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.06e-01 75.6% 70.0%
3nqkA02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.51 46.0 3.62e-01 98.7% 56.2%
3h51A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 37.0 3.11e-01 100.0% 42.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3501631 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.70 53.0 4.88e-01 79.5% 78.0%
3217379 896.1.1.2 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP14 0.70 53.0 4.92e-01 79.5% 76.8%
3892200 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.69 49.0 3.49e-01 75.6% 28.1%
3237781 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 48.0 5.12e-01 74.4% 89.2%
3559952 71.2.1.4 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.66 52.0 3.74e-01 87.2% 81.7%
3562593 4026.1.1.1 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.65 52.0 4.10e-01 85.9% 51.9%
5083024 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 49.0 3.01e-01 79.5% 16.0%
3278990 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.65 49.0 3.88e-01 80.8% 41.8%
3701230 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.64 51.0 3.16e-01 84.6% 22.6%
4211964 7504.1.1.5 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › DUF5427 0.63 48.0 3.47e-01 80.8% 85.9%
3619214 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 43.0 4.94e-01 78.2% 100.0%
3911618 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 3.63e-01 80.8% 35.4%
3512850 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.63 50.0 4.15e-01 87.2% 62.3%
3706903 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 52.0 4.18e-01 92.3% 49.7%
3701124 4252.1.1.1 beta barrels › AttH-like › AttH-like › AttH-like › CrtC 0.62 50.0 3.70e-01 85.9% 77.4%
3709649 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.61 51.0 4.35e-01 92.3% 61.5%
3614913 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 48.0 4.74e-01 87.2% 94.1%
3479441 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.61 49.0 3.30e-01 89.7% 65.4%
5082048 4200.1.1.0 beta barrels › YmcC-like › YmcC-like › YmcC-like 0.61 50.0 3.76e-01 89.7% 71.1%
3591665 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 43.0 3.42e-01 75.6% 59.4%
4182070 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.60 49.0 4.20e-01 91.0% 61.5%
3554073 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 47.0 4.04e-01 88.5% 52.3%
3606505 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.60 46.0 2.93e-01 82.1% 24.4%
3832622 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 48.0 3.25e-01 89.7% 48.9%
3783089 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.59 47.0 4.10e-01 85.9% 60.8%
4968521 283.1.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase 0.59 41.0 3.97e-01 100.0% 64.0%
3747453 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 50.0 4.17e-01 96.2% 63.6%
3251342 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 48.0 4.22e-01 91.0% 60.8%
3950026 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.59 40.0 3.41e-01 100.0% 41.8%
3565146 109.4.1.816 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RALGAPB_N 0.58 47.0 2.65e-01 87.2% 6.8%
3478366 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 45.0 4.09e-01 88.5% 61.9%
3698492 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 45.0 3.87e-01 84.6% 64.0%
3388724 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.57 47.0 4.19e-01 91.0% 63.4%
4936010 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.57 44.0 2.97e-01 84.6% 85.8%
3798524 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.57 46.0 4.10e-01 89.7% 60.9%
3718216 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.57 44.0 3.75e-01 82.1% 87.2%
3855429 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 45.0 2.73e-01 88.5% 11.7%
3986530 330.1.1.33 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › SF0329 0.56 45.0 3.89e-01 87.2% 56.1%
3893274 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.56 43.0 3.55e-01 84.6% 68.0%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.55 51.0 4.18e-01 100.0% 96.3%
3380536 4252.1.1.7 beta barrels › AttH-like › AttH-like › AttH-like › Tocopherol_cycl 0.55 44.0 3.57e-01 85.9% 74.7%
3608162 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 41.0 3.31e-01 80.8% 59.4%
3277986 243.1.1.28 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.55 40.0 3.44e-01 98.7% 47.3%
3699292 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 46.0 3.45e-01 91.0% 53.0%
3937062 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 46.0 3.47e-01 100.0% 39.4%
3632708 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 48.0 3.03e-01 100.0% 25.0%
3201856 2004.1.1.199 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.54 47.0 2.77e-01 92.3% 17.2%
5000341 330.1.1.2 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.54 40.0 3.45e-01 78.2% 89.6%
4951151 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.54 46.0 3.11e-01 98.7% 28.2%
4012048 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 46.0 2.94e-01 92.3% 27.6%
4003224 9.1.1.48 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_10 0.54 45.0 3.46e-01 93.6% 46.7%
2546240 5.1.3.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neuraminidase 0.53 44.0 3.24e-01 91.0% 77.8%
3599997 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.53 44.0 2.53e-01 92.3% 11.4%
3703231 216.1.1.2 a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C 0.53 40.0 3.19e-01 82.1% 58.8%
3601677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 42.0 2.95e-01 88.5% 64.2%
3584409 223.2.1.34 a+b three layers › Profilin-like › profilin-like › profilin-like › NPR2 0.53 38.0 3.10e-01 79.5% 67.1%
3962922 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 37.0 2.96e-01 74.4% 37.6%
5079500 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.52 47.0 3.56e-01 98.7% 51.7%
4595466 3572.1.1.2 a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.52 37.0 3.25e-01 87.2% 47.2%
3595257 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.52 42.0 2.83e-01 88.5% 53.9%
3995685 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.52 44.0 3.95e-01 93.6% 72.5%
134734 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.51 37.0 3.11e-01 100.0% 42.3%
3314075 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.51 39.0 3.60e-01 84.6% 85.7%
3441483 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.51 43.0 2.82e-01 94.9% 36.8%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 46.0 3.15e-01 97.4% 39.2%
3725346 243.1.1.25 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_3 0.50 37.0 3.26e-01 100.0% 49.2%
3848773 243.1.1.13 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › CaMKII_AD 0.50 34.0 2.78e-01 70.5% 35.2%
3920715 2004.1.1.674 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21, AAA_23, SbcC_Walker_B 0.50 42.0 2.60e-01 93.6% 20.0%
3932932 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.50 37.0 3.47e-01 82.1% 88.6%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.50 39.0 3.59e-01 89.7% 77.3%